Factsheet for VIT_19s0090g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73733	Soybean	nucleus	61.23	63.53
KRH46168	Soybean	nucleus	61.37	62.95
KRH14411	Soybean	nucleus	60.39	62.75
KRG98777	Soybean	nucleus	61.09	62.66
Solyc07g064580.2.1	Tomato	nucleus	55.37	58.99
PGSC0003DMT400057488	Potato	nucleus	55.65	57.66
CDY37111	Canola	nucleus	54.39	57.44
Bra018866.1-P	Field mustard	nucleus	53.56	57.06
AT1G50660.1	Thale cress	nucleus	57.6	56.97
CDY22812	Canola	nucleus	52.3	56.82
PGSC0003DMT400071667	Potato	nucleus	51.74	54.48
GSMUA_Achr6P00380_001	Banana	nucleus	32.36	54.21
VIT_10s0116g01830.t01	Wine grape	nucleus	55.65	54.14
GSMUA_Achr7P00230_001	Banana	nucleus	36.68	53.35
Solyc12g005010.1.1	Tomato	nucleus	49.79	53.2
AT3G20350.1	Thale cress	plastid	49.79	53.05
CDY25414	Canola	mitochondrion	45.61	51.33
Bra035788.1-P	Field mustard	mitochondrion	45.61	51.33
CDY29821	Canola	mitochondrion	45.33	50.86
GSMUA_Achr8P01540_001	Banana	nucleus	34.17	48.42
GSMUA_Achr6P19720_001	Banana	nucleus	46.58	47.65
GSMUA_Achr10P...	Banana	nucleus, plastid	46.3	47.09
GSMUA_Achr2P03040_001	Banana	nucleus	29.99	46.94
TraesCS1B01G329400.1	Wheat	plastid	41.84	45.66
GSMUA_Achr9P30230_001	Banana	nucleus, plastid	45.19	45.44
TraesCS1D01G317000.1	Wheat	nucleus, plastid	41.42	45.21
TraesCS1A01G317000.1	Wheat	plastid	41.28	44.78
Zm00001d026344_P001	Maize	plastid	42.82	44.69
HORVU1Hr1G066770.1	Barley	mitochondrion, plasma membrane	41.42	44.0
EES12886	Sorghum	plastid	42.26	43.79
EES19759	Sorghum	plastid	40.59	43.56
Zm00001d002252_P001	Maize	plastid	41.42	43.29
Zm00001d038595_P001	Maize	nucleus, plastid	40.59	43.18
Zm00001d012593_P001	Maize	plastid	35.84	42.9
Os04t0625000-01	Rice	nucleus	41.56	42.82
TraesCS2A01G469100.1	Wheat	plastid	40.73	42.14
TraesCS2D01G469200.1	Wheat	plastid	40.59	42.11
TraesCS2B01G492000.1	Wheat	plastid	40.17	42.04
EES01592	Sorghum	plastid	39.05	41.42
Zm00001d043218_P001	Maize	plastid	38.08	40.56
Os08t0190700-00	Rice	nucleus	33.47	40.47
OQU80028	Sorghum	plastid	37.24	40.45
Zm00001d000005_P002	Maize	plastid	36.4	37.88
TraesCS7A01G295000.1	Wheat	plastid	31.52	35.99
TraesCS7D01G288600.1	Wheat	plastid	31.66	35.3
TraesCS7B01G197400.1	Wheat	plastid	31.52	35.09
HORVU7Hr1G065950.7	Barley	vacuole	31.38	34.19
GSMUA_Achr4P23750_001	Banana	cytosol	18.41	32.35
VIT_06s0080g00930.t01	Wine grape	plastid	22.87	25.15
VIT_08s0007g02790.t01	Wine grape	plastid	23.01	25.08
VIT_15s0046g01530.t01	Wine grape	mitochondrion	20.08	21.85
VIT_02s0025g00840.t01	Wine grape	nucleus	18.83	19.82

Protein Annotations

ArrayExpress:VIT_19s0090g00370	EMBL:FN595751	EnsemblPlants:VIT_19s0090g00370.t01	EnsemblPlantsGene:VIT_19s0090g00370	EntrezGene:100255542	EntrezGene:LOC100255542
ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF2	ProteinID:CCB50658	ProteinID:CCB50658.1	RefSeq:XP_002280336
RefSeq:XP_002280336.1	SEG:seg	TIGR:TC55045	unigene:Vvi.16024	UniParc:UPI00019854E0	UniProt:F6HEJ9
wikigene:100255542	wikigene:LOC100255542	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr19:+:6519954..6524268

Molecular Weight (calculated)

80783.2 Da

IEP (calculated)

8.677

GRAVY (calculated)

-0.885

Length

717 amino acids

Sequence
(BLAST)

001: MKITATTELP TTIPAILSSR ARNASPDSDL ISKRSSRKPP RRKARTPAGG ARLKRDGAAG GRRSRPETPL LRWKFDDIER EKDANVLDVD EKIAPEHGRR
101: SGRKVRKGRE VTVSSRRLAS GLWRLQLPGV DAAHGGRWSR QKSEDRLGFE PGIDRVRTPF PCQSNTKAYD SEAKDLLQSP HSMHHHKSGF LCRLEPSFQF
201: SNSAMEGATK WNPVCSKTSD EVRQLYGQMK QFDQQVSAVS VVSALEAELA QARARIDELE AERRSSKKKL EHFLKKVSEE RASWRRREHE KIRAIIDDVK
301: TDLNRERKNR QRIELINSKL VNELSDVKLS AKRFMQDYEK ERKDREVLEE VCDELAKEIG DDKAEAESLK RESMKLRDEM EEERKMLQMA EVWREERVQM
401: KLVAAKVALE EKYAQMNKVM ADIAAFLRSK GANPDVKEMK EVESLCEAAA AVNIQDVKEF TYVPPNPDDI FSILEEVNFG EPNEREIEAC AAYSPASHAS
501: KIHTVSPEIN MVKKDDIRRH SNAFSEENGD IEEDESGWET VSHAEDQGSS YSPGGSDPSV HKFRQDSNAS GSGTDWEENA DEETPITEIS EVRSVPMKQL
601: KKGSSISRLW KSCPNNGENY KIISVVEGMN GRLSNGRISS AGIMSPDRGS GKGGLSPPDL AGQWSSPDSG NPHVNRGMKG CIEWPRGAQK NSLKAKLLEA
701: RMESQKIQLR QVLKQKI

Best Arabidopsis Sequence Match ( AT1G50660.1 )
(BLAST)

001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI

Arabidopsis Description

Actin cytoskeleton-regulatory complex pan-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LPT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.