Factsheet for Solyc12g005010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071667	Potato	nucleus	94.34	92.95
Solyc07g064580.2.1	Tomato	nucleus	66.47	66.27
Bra018866.1-P	Field mustard	nucleus	51.86	51.71
CDY22812	Canola	nucleus	50.52	51.36
CDY37111	Canola	nucleus	51.42	50.81
KRH73733	Soybean	nucleus	52.16	50.65
KRG98777	Soybean	nucleus	52.01	49.93
VIT_19s0090g00370.t01	Wine grape	plastid	53.2	49.79
KRH14411	Soybean	nucleus	50.97	49.57
KRH46168	Soybean	nucleus	51.27	49.21
AT1G50660.1	Thale cress	nucleus	52.31	48.41
GSMUA_Achr7P00230_001	Banana	nucleus	34.87	47.46
GSMUA_Achr6P00380_001	Banana	nucleus	29.66	46.5
AT3G20350.1	Thale cress	plastid	45.16	45.02
GSMUA_Achr8P01540_001	Banana	nucleus	33.83	44.86
GSMUA_Achr6P19720_001	Banana	nucleus	46.5	44.51
CDY25414	Canola	mitochondrion	42.03	44.27
Bra035788.1-P	Field mustard	mitochondrion	42.03	44.27
CDY29821	Canola	mitochondrion	41.43	43.51
GSMUA_Achr2P03040_001	Banana	nucleus	29.06	42.58
GSMUA_Achr10P...	Banana	nucleus, plastid	44.71	42.55
GSMUA_Achr9P30230_001	Banana	nucleus, plastid	43.67	41.09
TraesCS1B01G329400.1	Wheat	plastid	38.6	39.42
TraesCS1A01G317000.1	Wheat	plastid	38.75	39.33
TraesCS1D01G317000.1	Wheat	nucleus, plastid	38.3	39.12
Os04t0625000-01	Rice	nucleus	40.54	39.08
Zm00001d002252_P001	Maize	plastid	39.64	38.78
HORVU1Hr1G066770.1	Barley	mitochondrion, plasma membrane	38.75	38.52
EES12886	Sorghum	plastid	39.64	38.44
Zm00001d026344_P001	Maize	plastid	39.34	38.43
TraesCS2B01G492000.1	Wheat	plastid	38.45	37.66
TraesCS2A01G469100.1	Wheat	plastid	38.75	37.52
Zm00001d012593_P001	Maize	plastid	33.38	37.4
TraesCS2D01G469200.1	Wheat	plastid	38.45	37.34
Zm00001d038595_P001	Maize	nucleus, plastid	36.96	36.8
Os08t0190700-00	Rice	nucleus	32.34	36.59
Zm00001d043218_P001	Maize	plastid	36.66	36.55
EES19759	Sorghum	plastid	36.36	36.53
OQU80028	Sorghum	plastid	35.77	36.36
EES01592	Sorghum	plastid	36.21	35.95
Solyc02g080520.2.1	Tomato	nucleus	32.19	34.12
Zm00001d000005_P002	Maize	plastid	34.87	33.96
TraesCS7A01G295000.1	Wheat	plastid	30.1	32.17
TraesCS7D01G288600.1	Wheat	plastid	30.55	31.88
TraesCS7B01G197400.1	Wheat	plastid	30.25	31.52
GSMUA_Achr4P23750_001	Banana	cytosol	18.93	31.13
HORVU7Hr1G065950.7	Barley	vacuole	30.1	30.7
Solyc06g074190.2.1	Tomato	nucleus	19.37	23.99
Solyc11g068720.1.1	Tomato	nucleus	21.16	22.4
Solyc10g083190.1.1	Tomato	plastid	21.76	22.09
Solyc01g095390.2.1	Tomato	nucleus	15.5	18.25
Solyc08g081830.2.1	Tomato	nucleus, plastid	16.84	16.67

Protein Annotations

EnsemblPlants:Solyc12g005010.1.1	EnsemblPlantsGene:Solyc12g005010.1	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF2	SEG:seg
UniParc:UPI000276A165	UniProt:K4DB39	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr12:+:4827..8098

Molecular Weight (calculated)

76222.9 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.849

Length

671 amino acids

Sequence
(BLAST)

001: MKITGDKAEL PAVTFPGLDL LQKSTKPPRR KTNNFAAGVK LRRDIGGNTP KGRRSRPETP LLRWKFNEDI HDNGSVKEEA STVEVDRKCS RNNGRTVVSV
101: RKLGAGLFRQ QQLPEVKNDH KFGFQAGRVE MHFHHRSKVH DSLINDPVQS PRSVFGPTNG LFHKFETSLQ FSHSAMEGAT KWDPVGWTTA VETKKIYGSQ
201: KLLDHQVNTA SMISSLEAEL ECARARVHQL ETERHSSKKK LKQFLRKLSE EKAAWRSKEH EKIRAIMDEM RADFSRERKN RKRLEIVNSQ LVNELADAKL
301: LAKRYLQNFE KEKQARGLIE EVCDELAKEL GEDKAEVEEM KRESLKFTEE VDEERKMLQM AEVWREERVQ MKLVDAKVML EEKYSQMNKL IGELESFLDS
401: RGLSFDVEKM KRAEQLQQAA ASVSIRDIRE LTYEPPNQDD ILSVFEDVHF VEPDEKDIQP CTFSPRSLSP DGVVYDFRRI SHAYVNQSDN LEEEGSEWET
501: VTNLEEQGSN YSLEGSISSV NKNCRHSNVS RSRADSEGIG DDGASVSEIS EVCSGPARQL TELSSASKLW KSRPSNGDNF KIKSLEGSKG RLSNGTILSR
601: DHGSSKGGFS PSELGQEWSS PESGNSQIAR GMKGCIEWPQ NSQKKSLKTK LLQARTESQK VQLRQVLKQK I

Best Arabidopsis Sequence Match ( AT1G50660.1 )
(BLAST)

001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI

Arabidopsis Description

Actin cytoskeleton-regulatory complex pan-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LPT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.