Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51370 | Soybean | nucleus | 35.57 | 33.02 |
| KRH60674 | Soybean | nucleus | 34.76 | 32.39 |
| VIT_05s0020g01130.t01 | Wine grape | mitochondrion | 46.34 | 32.25 |
| CDY05302 | Canola | plastid | 39.63 | 30.33 |
| GSMUA_Achr3P24670_001 | Banana | plastid | 40.85 | 30.13 |
| CDY24656 | Canola | mitochondrion | 38.21 | 29.51 |
| Bra029613.1-P | Field mustard | plastid | 38.82 | 25.67 |
| AT3G06980.1 | Thale cress | plastid | 37.2 | 23.43 |
| Solyc12g056740.1.1 | Tomato | nucleus | 17.48 | 13.52 |
| Solyc05g006130.2.1 | Tomato | mitochondrion, plastid | 14.23 | 12.52 |
| Solyc11g045180.1.1 | Tomato | nucleus | 1.22 | 3.31 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR014014 |
| UniProt:K4D8I3 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFscan:PS51192 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF181 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc11g045190.1 | EnsemblPlants:Solyc11g045190.1.1 |
| UniParc:UPI000276A766 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:31493503..31500408
Molecular Weight (calculated)
55136.3 Da
IEP (calculated)
8.377
GRAVY (calculated)
-0.531
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAAPRPPAL TVGCFKFQNP SANVNLVQRN VGSSNCKRVV VAAKATYSRV PLDTPGAYQL IDEDTGEKFI VWGSAEDDSS NSPIPSNEVL SWKPLPSPNN
101: NNNDNDSTIN QASNRGSTGN FGRLKFRRMR DLVRKSYTKN KKRDVIEHDE HNVTNTSSQS STSSYGELDQ LKEKQKLSAR ALAKIQQLES RKNSPKIIRM
201: EDEGYNGDFD AEFGRLVDSR SKASASSLRG WGRGQSIHDR SMGEEISRRR QNLDDRNNFF SRKSFHDMGC SDYMIEALRN QHFVRPSHIQ SLTFEPIMAG
301: KSCIVSDQSG SGKTLAYLLP LIQRLRQEEL QGLSKPSPQS PRVVILAPTT ELASQVLNTC RSFSKSGVPF RSMVVTGGFR QRTQLENLRQ ELDVLIATPG
401: RFMFLIKEGY LQLTNLKCAV LDEVDILFND EDFETAFQCL INSSPIITQY LFVTATLPMD IYNKLVESFP DCELVTGPGM HRTSPGLEEI QI
101: NNNDNDSTIN QASNRGSTGN FGRLKFRRMR DLVRKSYTKN KKRDVIEHDE HNVTNTSSQS STSSYGELDQ LKEKQKLSAR ALAKIQQLES RKNSPKIIRM
201: EDEGYNGDFD AEFGRLVDSR SKASASSLRG WGRGQSIHDR SMGEEISRRR QNLDDRNNFF SRKSFHDMGC SDYMIEALRN QHFVRPSHIQ SLTFEPIMAG
301: KSCIVSDQSG SGKTLAYLLP LIQRLRQEEL QGLSKPSPQS PRVVILAPTT ELASQVLNTC RSFSKSGVPF RSMVVTGGFR QRTQLENLRQ ELDVLIATPG
401: RFMFLIKEGY LQLTNLKCAV LDEVDILFND EDFETAFQCL INSSPIITQY LFVTATLPMD IYNKLVESFP DCELVTGPGM HRTSPGLEEI QI
001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T
Arabidopsis Description
RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.