Factsheet for Solyc05g006130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24505	Canola	cytosol	17.71	64.29
CDY64618	Canola	cytosol	14.31	61.07
VIT_01s0026g00640.t01	Wine grape	plastid	61.18	57.67
CDY69637	Canola	mitochondrion, plastid	53.85	55.64
Bra035413.1-P	Field mustard	mitochondrion, plastid	56.53	55.24
CDY61158	Canola	plastid	56.53	55.24
TraesCS5D01G206600.1	Wheat	mitochondrion	55.99	55.01
TraesCS5B01G199500.1	Wheat	mitochondrion	55.46	54.48
Zm00001d020357_P003	Maize	plastid	55.64	54.18
KRG99241	Soybean	plastid	55.99	54.06
KXG35557	Sorghum	mitochondrion	56.35	52.85
AT1G59990.1	Thale cress	plastid	54.92	52.84
Os09t0383400-01	Rice	mitochondrion	46.87	52.61
GSMUA_Achr8P23590_001	Banana	mitochondrion	55.81	52.44
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	55.99	52.34
TraesCS5A01G200900.1	Wheat	mitochondrion	55.64	51.58
CDY64619	Canola	cytosol	16.82	48.96
HORVU2Hr1G060040.2	Barley	plastid	10.91	45.86
Solyc11g045180.1.1	Tomato	nucleus	8.77	27.07
Solyc12g056740.1.1	Tomato	nucleus	21.29	18.71
Solyc11g045190.1.1	Tomato	nucleus	12.52	14.23

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K4BWE0	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc05g006130.2	EnsemblPlants:Solyc05g006130.2.1	UniParc:UPI00027671CF	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 22 [Source:Projected from Arabidopsis thaliana (AT1G59990) UniProtKB/Swiss-Prot;Acc:Q944S1]

Coordinates

chr5:+:839061..843802

Molecular Weight (calculated)

62339.0 Da

IEP (calculated)

6.929

GRAVY (calculated)

-0.322

Length

559 amino acids

Sequence
(BLAST)

001: MILQHSISIC KLWRSSSPPN LYLFRPFVAY QPHCCRIRAF GSAVSASKVV ETNTNETFFA EESVSWTSLG VSESLSRALS SSGLHRPSLI QAACIPSILS
101: GVDVVVAAET GSGKTHGYLV PLIDKLCQIS DSSGAITGQD ARKHNRLSLV LCPNVMLCEQ VVRMANSLCN DSGTPLLSIA AVCGRQVWPV KEPDVMVSTP
201: AALLNYLYSI DPERRRRSEF IRSVKYVVFD EADMLLCGSF QNQVVRLINM LRFDEKQLSR SKNSGAEMSS TSDLEEFRDL KADYGEDADE VEDEDEDEDE
301: DTEVGKDRAN LETDTKGLKR RDWRRVRKIY ERSKQYIFVA ATLPENGKRT AGGVLKRMFP EATWVSGNYL HQHSPRLEQR WIEVSVDTQV DILINAVENG
401: NSMADSSPGV LRTMVFANTV DAVEAVANIL TRVGLECFRY HSDSSLEERT KNLLDFQQKG GVFVCTDAAA RGIDIPNVSH VIQAEFATSA VDFLHRVGRT
501: ARAGQPGLVT SLYSESNRDL VAAIRHAEKI EEPVEKAFSR KRSFRNKIKK RGREASHMR

Best Arabidopsis Sequence Match ( AT1G59990.2 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRGK

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.