CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71349
CDX88001
CDY07870
CDY24170
CDY26796
CDY31374
CDY36943
CDY47488

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	CDX71349	AT2G17200.1	23336935
AT1G79810.1	CDX88001	AT2G17200.1	23336935
AT1G79810.1	CDY07870	AT2G17200.1	23336935
AT1G79810.1	CDY26796	AT2G17200.1	23336935
AT1G79810.1	CDY31374	AT2G17200.1	23336935
AT1G79810.1	CDY47488	AT2G17200.1	23336935
AT1G79810.1	CDY24170	AT3G47620.1	21798944
AT1G79810.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	99.7	99.7
CDY70404	Canola	cytosol, nucleus, peroxisome	68.47	99.56
CDX79411	Canola	plastid	98.5	97.91
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	92.19	92.19
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	68.77	76.85
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	68.17	76.17
KRH44319	Soybean	plastid	74.17	74.85
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	68.77	74.35
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	74.47	71.68
KXG24014	Sorghum	cytosol, nucleus, peroxisome	70.57	69.53
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	72.97	69.43
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	69.97	69.14
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	70.87	69.01
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	72.97	68.84
Solyc12g027700.1.1	Tomato	extracellular	9.91	68.75
KRH47250	Soybean	cytosol, nucleus, peroxisome	75.08	68.68
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	70.87	68.21
KRH75574	Soybean	endoplasmic reticulum, extracellular	36.04	67.8
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	71.47	65.03
EES16336	Sorghum	cytosol, golgi, peroxisome	65.47	60.56
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	28.23	53.41
PGSC0003DMT400006784	Potato	cytosol	36.94	40.73

Protein Annotations

MapMan:23.4.1.4.1	Gene3D:3.30.40.10	GO:A0A078BUN2	EnsemblPlants:CDX67927	ProteinID:CDX67927	ProteinID:CDX67927.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00099135001	InterPro:IPR001841	InterPro:IPR013083
PFAM:PD124462	PFAM:PF00097	PFAM:PF04757	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR45174
InterPro:Pex_N	SUPFAM:SSF57850	UniParc:UPI0004EDE84E	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

BnaA07g19670D

Coordinates

chrLK031787:+:2923729..2926195

Molecular Weight (calculated)

38041.1 Da

IEP (calculated)

9.729

GRAVY (calculated)

-0.140

Length

333 amino acids

Sequence
(BLAST)

001: MTSPPPPDDD AWVRSHHRLL PQSQSLLSSH RSVIAVAISR VNQFDAARLD VEMSAMLKEQ LVKVFTLAKP GMLFQYEPEL DAFLEFLIWR FSIWVDKPTP
101: GNALMNLRYR DERVAAQLSG KVRTGLEGPG LTAPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL RARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAIKNILS PFAKESSSSN KEDTVACPIC QVDPATPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVT SGK

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.