CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	KRH03466	AT3G47620.1	21798944
AT1G79810.1	KRH54542	AT3G47620.1	21798944
AT1G79810.1	KRH56919	AT3G47620.1	21798944
AT1G79810.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47250	Soybean	cytosol, nucleus, peroxisome	96.97	87.91
KRH75574	Soybean	endoplasmic reticulum, extracellular	45.76	85.31
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	71.52	79.19
Solyc12g027700.1.1	Tomato	extracellular	11.52	79.17
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	82.42	78.61
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	70.91	78.52
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	71.82	76.95
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	80.61	76.0
CDY70404	Canola	cytosol, nucleus, peroxisome	52.73	75.98
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	80.91	75.64
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	75.76	75.08
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	74.85	74.17
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	74.85	74.17
CDX79411	Canola	plastid	74.55	73.43
KXG24014	Sorghum	cytosol, nucleus, peroxisome	72.73	71.01
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	72.42	70.92
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	73.33	70.76
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	73.64	70.23
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	73.33	66.12
EES16336	Sorghum	cytosol, golgi, peroxisome	66.97	61.39
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	32.42	60.8
PGSC0003DMT400006784	Potato	cytosol	41.21	45.03

Protein Annotations

EntrezGene:100805856	MapMan:23.4.1.4.1	Gene3D:3.30.40.10	EMBL:ACUP02004927	EnsemblPlantsGene:GLYMA_08G203400	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	UniProt:I1KV48	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH44319
ProteinID:KRH44319	ProteinID:KRH44319.1	PFAM:PD124462	PFAM:PF00097	PFAM:PF04757	ScanProsite:PS00518
PFscan:PS50089	PANTHER:PTHR45174	InterPro:Pex_N	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002338C9D
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:16490320..16494685

Molecular Weight (calculated)

37884.2 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.106

Length

330 amino acids

Sequence
(BLAST)

001: MTLPSHDAWI HTSHTLLPRW KSLSLPHQQS TLPISISRVN QVDAARLDVE MSAMLKEQLV KVFSLMKPGM LFQYEAELDA FLEFLIWRFS IWVDKPTPGI
101: ALMNLRYRDE RAVEPRDKVR TGLEGPGLTV AQKLWYCIAT VGGQYIWARL QSFSAFRRWG DTEQRPLARR LWILIQRIEG IYRAASFGNL LIFLCTGRYR
201: NLIERALRAR LVYGSPNMNR AVSFEYMNRQ LVWNEFSEML LLLLPLLNSS SVKNLLRPFS KDKSLSSAED GSACPICQAT PTIPYVALPC QHRYCYYCLR
301: TRCAAAPSFR CSRCSEPVVA MQRHGGVPSE

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.