Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0747400-01 | |
| Os03t0131300-01 | |
| Os06t0226700-01 | |
| Os10t0542200-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79810.1 | Os03t0131300-01 | AT2G17200.1 | 23336935 |
| AT1G79810.1 | Os10t0542200-01 | AT2G17200.1 | 23336935 |
| AT1G79810.1 | Os02t0747400-01 | AT3G47620.1 | 21798944 |
| AT1G79810.1 | Os06t0226700-01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G204300.2 | Wheat | cytosol, peroxisome, plastid | 81.29 | 93.29 |
| TraesCS7A01G303900.1 | Wheat | cytosol, nucleus, peroxisome | 80.7 | 92.62 |
| TraesCS7D01G299400.1 | Wheat | cytosol, golgi, mitochondrion, nucleus | 81.29 | 90.26 |
| KXG24014 | Sorghum | cytosol, nucleus, peroxisome | 87.13 | 88.17 |
| Zm00001d031028_P004 | Maize | cytosol, nucleus, peroxisome | 84.21 | 85.46 |
| HORVU7Hr1G072200.2 | Barley | cytosol, peroxisome | 83.04 | 82.08 |
| EES16336 | Sorghum | cytosol, golgi, peroxisome | 78.95 | 75.0 |
| KRH44319 | Soybean | plastid | 70.76 | 73.33 |
| AT1G79810.1 | Thale cress | cytosol, nucleus, peroxisome | 70.76 | 72.67 |
| VIT_09s0002g04110.t01 | Wine grape | cytosol, nucleus, peroxisome | 72.51 | 71.68 |
| Bra003533.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 69.3 | 71.17 |
| CDX67927 | Canola | cytosol, nucleus, peroxisome, plastid | 69.01 | 70.87 |
| CDX79411 | Canola | plastid | 69.01 | 70.45 |
| PGSC0003DMT400042540 | Potato | cytosol, mitochondrion, peroxisome, plastid | 71.64 | 70.0 |
| CDY70404 | Canola | cytosol, nucleus, peroxisome | 46.78 | 69.87 |
| Solyc06g066570.2.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 71.93 | 69.69 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 74.56 | 69.67 |
| Solyc12g027700.1.1 | Tomato | extracellular | 9.65 | 68.75 |
| KRH47250 | Soybean | cytosol, nucleus, peroxisome | 70.76 | 66.48 |
| KRH75574 | Soybean | endoplasmic reticulum, extracellular | 33.63 | 64.97 |
| Solyc03g120520.1.1 | Tomato | cytosol, nucleus, peroxisome | 28.66 | 55.68 |
| PGSC0003DMT400006784 | Potato | cytosol | 37.43 | 42.38 |
Protein Annotations
| MapMan:23.4.1.4.1 | Gene3D:3.30.40.10 | EntrezGene:4338276 | ProteinID:AAT85132.1 | EMBL:AK111642 | ProteinID:BAF16989.1 |
| ProteinID:BAS93113.1 | ProteinID:EEE63072.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0005829 |
| GO:GO:0006464 | GO:GO:0006513 | GO:GO:0006629 | GO:GO:0006635 | GO:GO:0006810 | GO:GO:0007031 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009506 | GO:GO:0009628 |
| GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016558 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os05g0275700 | EnsemblPlants:Os05t0275700-01 |
| PFAM:PD124462 | PFAM:PF00097 | PFAM:PF04757 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR45174 |
| InterPro:Pex_N | UniProt:Q6ATD1 | SUPFAM:SSF57850 | UniParc:UPI0000401B83 | RefSeq:XP_015637758.1 | InterPro:Znf_C3HC4_RING-type |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
RING finger protein OsRFPHC-15, RING-HC protein 15Similar to Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2) (Pex2p). (Os05t0275700-01)
Coordinates
chr5:-:11320504..11327124
Molecular Weight (calculated)
38940.8 Da
IEP (calculated)
8.742
GRAVY (calculated)
-0.212
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDPETLPSP SASTDSSSPP PDAWAAEYRR LLPQWESMRD SSKIAIPISI SRVNQFDAAR LDVEMSAMLK EQLVKVFSLV KPGLLFQYEP ELDAFLEFLI
101: WRFSIWVDKP TPGNALMNLR YRDERAAPIT GKEVRTGLEG PGLSVSQKVL YCISTVGGQY IWSRLQSFSA FRRWGDSEQR PLARRAWGLV QHAEGLYRAS
201: SFFNLLLFLY GARYKTIVER ILKARLVYES PNMNRAVSFE YMNRQLVWNE FSEMLLLLLP LLNSSSVKKF LLPFSKDKSA SSSGDEADCP ICRSSPSIPF
301: EALPCQHRYC YYCLQTRCAA TNSYRCARCN EIVVAIQRQG SS
101: WRFSIWVDKP TPGNALMNLR YRDERAAPIT GKEVRTGLEG PGLSVSQKVL YCISTVGGQY IWSRLQSFSA FRRWGDSEQR PLARRAWGLV QHAEGLYRAS
201: SFFNLLLFLY GARYKTIVER ILKARLVYES PNMNRAVSFE YMNRQLVWNE FSEMLLLLLP LLNSSSVKKF LLPFSKDKSA SSSGDEADCP ICRSSPSIPF
301: EALPCQHRYC YYCLQTRCAA TNSYRCARCN EIVVAIQRQG SS
001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
Arabidopsis Description
PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.