CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

nucleus 1
peroxisome 3
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER92003
EER92919
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	EER92003	AT2G17200.1	23336935
AT1G79810.1	EER92919	AT2G17200.1	23336935
AT1G79810.1	EER88112	AT3G47620.1	21798944
AT1G79810.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	80.28	85.76
KXG24014	Sorghum	cytosol, nucleus, peroxisome	80.28	85.5
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	68.61	82.89
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	68.33	82.55
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	68.61	80.19
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	75.0	78.95
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	70.28	73.12
KRH44319	Soybean	plastid	61.39	66.97
Solyc12g027700.1.1	Tomato	extracellular	8.89	66.67
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	60.83	65.77
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	60.56	65.47
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	60.56	65.47
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	63.06	64.86
CDX79411	Canola	plastid	60.28	64.78
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	63.33	64.59
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	61.94	64.45
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	64.72	63.66
CDY70404	Canola	cytosol, nucleus, peroxisome	38.89	61.14
KRH75574	Soybean	endoplasmic reticulum, extracellular	29.72	60.45
KRH47250	Soybean	cytosol, nucleus, peroxisome	61.11	60.44
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	22.78	46.59
PGSC0003DMT400006784	Potato	cytosol	34.44	41.06

Protein Annotations

EnsemblPlants:EES16336	EnsemblPlantsGene:SORBI_3008G162900	EntrezGene:8070130	InterPro:Pex_N	PANTHER:PTHR45174	PFAM:PF04757
ProteinID:EES16336	ProteinID:EES16336.1	RefSeq:XP_002442498.1	SEG:seg	unigene:Sbi.11389	unigene:Sbi.2124
UniParc:UPI0001A8808A	UniProt:C5YRI9	MapMan:23.4.1.4.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:59659100..59666185

Molecular Weight (calculated)

40893.8 Da

IEP (calculated)

9.619

GRAVY (calculated)

0.021

Length

360 amino acids

Sequence
(BLAST)

001: MAQVGSATAS ERPPPQDAWV VELRSLLPQW ESLRDSSKVI IPISISRVNQ FDAARLDVEM SAVLKEQLVK VFSLMKPGLL FQYEPELDAF LEFLIWRFSI
101: WVDKPTPGNA LMNLRYRDER AAPLTGKEVR TGLEGPGLSV SQKIFYCISF VGGQYIWSRL QSFSAFRRWG DSEQRPLAGR AWALMQNAEV LYRAASFFNL
201: LLFLYGGRYK TIVERILKAR LVYGSPNMNR AVSFEYMNRQ LVWNEFSEML LLLLPLLNSS SVKKFLLPFS KDKSAGSSGD EADCPICRSS PSIPFIALPC
301: QHSQKAFGLH VRLSRGLRQQ GFSLFTRESE FSLPALERLA LLGEVLLLLP THALFCYKFL

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.