Factsheet for Solyc06g076860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g081640.2.1
Solyc01g103010.2.1
Solyc07g054690.1.1
Solyc11g066160.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	Solyc01g103010.2.1	AT2G02560.1	20706207
AT2G29680.1	Solyc11g066160.1.1	AT2G28740.1	20706207
AT2G29680.1	Solyc01g081640.2.1	AT2G31920.1	20706207
AT2G29680.1	Solyc07g054690.1.1	AT4G28230.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078033	Potato	cytosol	97.18	96.82
VIT_06s0004g06300.t01	Wine grape	plastid	58.65	61.9
KRG98340	Soybean	mitochondrion, plastid	54.14	60.76
KRH46438	Soybean	plastid	53.38	60.17
AT1G07270.1	Thale cress	plastid	52.26	55.05
TraesCS3B01G400900.1	Wheat	plastid	45.3	54.77
CDY06693	Canola	nucleus	48.87	54.05
CDY02004	Canola	nucleus, plastid	50.38	53.71
CDX95747	Canola	plastid	52.63	52.53
EES01777	Sorghum	plastid	48.5	52.44
CDY10263	Canola	plastid	49.81	52.17
Bra015569.1-P	Field mustard	nucleus	48.31	52.02
GSMUA_Achr6P33780_001	Banana	nucleus	48.12	51.93
Zm00001d012320_P002	Maize	plastid	47.74	51.84
AT2G29680.1	Thale cress	plastid	52.44	51.76
HORVU3Hr1G084800.19	Barley	plastid	44.92	51.29
Zm00001d042810_P001	Maize	plastid	46.99	51.12
TraesCS3A01G369000.1	Wheat	plastid	46.62	49.7
TraesCS3D01G362000.1	Wheat	plastid	46.62	49.7
Os01t0856000-02	Rice	nucleus, plastid	47.74	49.32
CDY71310	Canola	cytosol	14.47	48.73
CDX94733	Canola	cytosol	11.84	43.15
Solyc03g006420.2.1	Tomato	nucleus	20.3	13.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.2.1.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:Cdc6/18	InterPro:Cdc6_C
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009744
GO:GO:0009987	GO:GO:0051301	InterPro:IPR036388	UniProt:K4CA44	InterPro:P-loop_NTPase	PFAM:PF09079
PFAM:PF13401	PIRSF:PIRSF001767	PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g076860.2	EnsemblPlants:Solyc06g076860.2.1	UniParc:UPI00027672EF	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:47762991..47770026

Molecular Weight (calculated)

59129.7 Da

IEP (calculated)

9.605

GRAVY (calculated)

-0.250

Length

532 amino acids

Sequence
(BLAST)

001: MPTIVDRRST RVSGGSKVAD PIASEIESTP QKRKLRSSSS STTEDSRITS DLTPSPLKSS PSKWKSPRRC VNDSPKSTLN ANRGAKAVNL SKSPVKRRLS
101: ESFLEKPMWN PRDMEQLNGV KEALHVSRAP SNLVCREVEN NRILEFCKQA VEQEKAGSLY ICGCPGTGKS LSMEKVNKVL VNWAEESGFQ APDTLSLNCS
201: SLSNTSDVFG KILDKITLRR KINTCTSPLQ YLQKMFSEKQ QSAVTKMLLI VADELDYLIT KDRAVLHELF MLTTLPFSRF ILIGIANAID LADKFLPKLQ
301: SLNCKPAVVT FRAYSKDQII SILQQRLKAF PYTIFQPQAL ELCARKVASA SGDMRKALWI CRSAIEMLES DIRDSINSLD LPSLHGGVSD QQRDCACDKS
401: LIHESNVVRV DHVAIALSKA YRSPVVDTIQ SLPQHQQIIL CSAVKLFRGK KKDATIGELN ISYLDICKST SIPPAGIMEL SNMCRVLGDQ GILKLGKARE
501: EKLSRVTLKV DEADITFALQ GIRFFRNCLQ QS

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.