CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015569.1-P	Field mustard	nucleus	96.05	93.52
CDY10263	Canola	plastid	77.96	73.82
AT1G07270.1	Thale cress	plastid	72.56	69.11
CDY71310	Canola	cytosol	21.0	63.92
CDY02004	Canola	nucleus, plastid	63.62	61.32
CDX95747	Canola	plastid	67.57	60.98
KRH46438	Soybean	plastid	52.6	53.6
VIT_06s0004g06300.t01	Wine grape	plastid	55.3	52.78
KRG98340	Soybean	mitochondrion, plastid	51.98	52.74
TraesCS3B01G400900.1	Wheat	plastid	46.36	50.68
PGSC0003DMT400078033	Potato	cytosol	54.26	48.88
Solyc06g076860.2.1	Tomato	nucleus	54.05	48.87
HORVU3Hr1G084800.19	Barley	plastid	46.99	48.5
Zm00001d012320_P002	Maize	plastid	48.44	47.55
Zm00001d042810_P001	Maize	plastid	48.23	47.44
TraesCS3A01G369000.1	Wheat	plastid	48.65	46.89
TraesCS3D01G362000.1	Wheat	plastid	48.44	46.69
CDX94733	Canola	cytosol	14.14	46.58
GSMUA_Achr6P33780_001	Banana	nucleus	47.61	46.45
EES01777	Sorghum	plastid	47.4	46.34
Os01t0856000-02	Rice	nucleus, plastid	48.44	45.24
CDY16697	Canola	plastid	21.0	12.48
CDY62377	Canola	plastid	21.0	12.38

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.2.1.4	Gene3D:3.40.50.300	GO:A0A078F4R5	InterPro:AAA+_ATPase	EnsemblPlants:CDY06693
ProteinID:CDY06693	ProteinID:CDY06693.1	InterPro:Cdc6/18	InterPro:Cdc6_C	GO:GO:0006139	GO:GO:0006259
GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051301
EnsemblPlantsGene:GSBRNA2T00122870001	InterPro:IPR036388	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401	PIRSF:PIRSF001767
PANTHER:PTHR10763	SMART:SM01074	SUPFAM:SSF46785	SUPFAM:SSF52540	UniParc:UPI0004EF35FE	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaA10g04720D

Coordinates

chrLK031972:-:322647..325798

Molecular Weight (calculated)

53191.5 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.179

Length

481 amino acids

Sequence
(BLAST)

001: MPTIAGSEKS EEVSLLSEDT ISTPKKLKSR QRIAVSNLRT PDKEVKQDSH ENLAVDSLSD CLGSESRDED QMRAVKEALH VSKAPSTIVC REDEHRRVFE
101: FVKGCLDQQK AGSLYICGCP GTGKSLSIEK VVKQVGDWSK QACLPPVDTL SVNCTSLTKT ADIFSKILEI VEPVKEDNCY SSPLHRLQSL FSQKQDSSSR
201: MMLIIADEMD FLITKDRGVL HDLFMLTIFP FSTCILIGVA NAIDLADRFL PKLKSLNCKP MVITFPAYSK DQILRILQER LMVLPYVAFQ SNALELCARK
301: VAAASGDMRK ALSVCRSAIE ILEIDIRGSP GPESQGPTPD NPVVRMDHMA AALSKTFKSP VVDTIQTLPQ HQQIIICSAA KAFRGSKKDA TIGELNKLYL
401: EICKSRVISP AGITEFTNMC TVLNDQGILK FGQARGNKLK RVSLRVDESD ITFALQELSS VRRTSSLQWK TSCAKNSRAK L

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.