CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00250
EES06334
EES12723
EES18362

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	EES18362	AT1G07820.1	20706207
AT2G29680.1	EES06334	AT2G02560.1	20706207
AT2G29680.1	EES00250	AT3G46320.1	20706207
AT2G29680.1	EES12723	AT3G53730.1	20706207
AT2G29680.1	EES00250	AT5G59970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012320_P002	Maize	plastid	87.2	87.55
Zm00001d042810_P001	Maize	plastid	83.94	84.46
TraesCS3B01G400900.1	Wheat	plastid	71.54	80.0
HORVU3Hr1G084800.19	Barley	plastid	72.76	76.82
Os01t0856000-02	Rice	nucleus, plastid	78.25	74.76
TraesCS3D01G362000.1	Wheat	plastid	75.2	74.15
TraesCS3A01G369000.1	Wheat	plastid	75.2	74.15
KRG98340	Soybean	mitochondrion, plastid	51.22	53.16
KRH46438	Soybean	plastid	50.61	52.75
GSMUA_Achr6P33780_001	Banana	nucleus	52.85	52.74
VIT_06s0004g06300.t01	Wine grape	plastid	51.63	50.4
CDY02004	Canola	nucleus, plastid	49.8	49.1
AT1G07270.1	Thale cress	plastid	50.2	48.91
PGSC0003DMT400078033	Potato	cytosol	52.85	48.69
Solyc06g076860.2.1	Tomato	nucleus	52.44	48.5
CDY06693	Canola	nucleus	46.34	47.4
Bra015569.1-P	Field mustard	nucleus	46.14	45.95
CDY10263	Canola	plastid	47.15	45.67
CDX95747	Canola	plastid	49.19	45.4
AT2G29680.1	Thale cress	plastid	49.19	44.9
CDY71310	Canola	cytosol	13.82	43.04
CDX94733	Canola	cytosol	12.2	41.1
OQU75979	Sorghum	plastid	23.37	14.2

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.60	MapMan:13.2.1.4	Gene3D:3.40.50.300	EntrezGene:8058933	InterPro:AAA+_ATPase
UniProt:C5XQG1	InterPro:Cdc6/18	InterPro:Cdc6_C	EnsemblPlants:EES01777	ProteinID:EES01777	ProteinID:EES01777.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009744	GO:GO:0009987
GO:GO:0051301	InterPro:IPR036388	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401	PIRSF:PIRSF001767
PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM01074	EnsemblPlantsGene:SORBI_3003G361200	SUPFAM:SSF46785	SUPFAM:SSF52540
UniParc:UPI0001A84686	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002456657.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:67880581..67884692

Molecular Weight (calculated)

54149.0 Da

IEP (calculated)

9.181

GRAVY (calculated)

-0.152

Length

492 amino acids

Sequence
(BLAST)

001: MPTLRSATAN ASSVAVGTPS PAAASTPRSV KRRLTPGRAG ELPAASRHTS PHRSPHAGTG TVCMPKLLSA SPKSSRKRLY GDLVAAEKPK WNPRDAAQMR
101: AVKEALHVAT VPSSELVCRD NELRRVLEFC KASVEQEKAG SLYVCGCPGT GKTLSINKIK DSLVCWADEM GMETPDSLAI NCTNLANTSE IFGKILGKFQ
201: NRKKGSSKLS PLQQLQSMFS SKDSAPRRMM LVIVDEMDYL ITRDRAVLHD LFMLTTCAFS RCILIGIANA IDLADRFLPK LESLNCKPLV VTFRAYSKDQ
301: ISDIVKHRLK GLEYDVFEPL ALEFCARKVA AASGDMRKAL GVCRSAVEVL EARLQDSPDQ ELGIVTFDHM DIALSKAFKS AVIDSILCLP QHQQMVLCAL
401: ANTFQHCKKK ATTLGELNKS YIEICRSTQV PAVGMLEFSN MCMVLSDQGF MKLGQSKEDK LRRVTLQIDS SDITFAFKGN RFFQKCLEQP RC

Best Arabidopsis Sequence Match ( AT2G29680.2 )
(BLAST)

001: MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SKDQILRILQ ERLVALPFVA FQSNALEICA RKVSAASGDM RKALCVCRSA LEILEIEVRG SIDQEPKGPV PECQVVKMDH MIAALSKTFK
401: SPIVDTIQSL PQHQQIIVCS AAKAFRGSKK DRTIAELNKL YLEICKSSMI TPAGITEFSN MCTVLNDQGI LKLSLARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL

Arabidopsis Description

CDC6Cell division control protein 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:O82387]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.