Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G400900.1 | Wheat | plastid | 51.93 | 58.18 |
| HORVU3Hr1G084800.19 | Barley | plastid | 50.3 | 53.22 |
| Zm00001d042810_P001 | Maize | plastid | 52.74 | 53.17 |
| Zm00001d012320_P002 | Maize | plastid | 52.74 | 53.06 |
| EES01777 | Sorghum | plastid | 52.74 | 52.85 |
| TraesCS3D01G362000.1 | Wheat | plastid | 52.94 | 52.3 |
| TraesCS3A01G369000.1 | Wheat | plastid | 52.74 | 52.1 |
| KRG98340 | Soybean | mitochondrion, plastid | 49.7 | 51.69 |
| VIT_06s0004g06300.t01 | Wine grape | plastid | 52.74 | 51.59 |
| KRH46438 | Soybean | plastid | 49.09 | 51.27 |
| Os01t0856000-02 | Rice | nucleus, plastid | 53.14 | 50.87 |
| AT1G07270.1 | Thale cress | plastid | 50.51 | 49.31 |
| CDY10263 | Canola | plastid | 49.7 | 48.23 |
| PGSC0003DMT400078033 | Potato | cytosol | 52.13 | 48.13 |
| Solyc06g076860.2.1 | Tomato | nucleus | 51.93 | 48.12 |
| CDY06693 | Canola | nucleus | 46.45 | 47.61 |
| CDX95747 | Canola | plastid | 51.12 | 47.28 |
| CDY02004 | Canola | nucleus, plastid | 47.67 | 47.09 |
| Bra015569.1-P | Field mustard | nucleus | 47.06 | 46.96 |
| AT2G29680.1 | Thale cress | plastid | 50.51 | 46.2 |
| CDX94733 | Canola | cytosol | 12.17 | 41.1 |
| CDY71310 | Canola | cytosol | 12.58 | 39.24 |
| GSMUA_Achr8P31340_001 | Banana | nucleus | 22.52 | 13.88 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.8.60 | MapMan:13.2.1.4 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:Cdc6/18 |
| InterPro:Cdc6_C | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006270 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009744 |
| GO:GO:0009987 | GO:GO:0051301 | EnsemblPlantsGene:GSMUA_Achr6G33780_001 | EnsemblPlants:GSMUA_Achr6P33780_001 | EnsemblPlants:GSMUA_Achr6T33780_001 | InterPro:IPR036388 |
| UniProt:M0TCH1 | InterPro:P-loop_NTPase | PFAM:PF09079 | PFAM:PF13401 | PIRSF:PIRSF001767 | PANTHER:PTHR10763 |
| PANTHER:PTHR10763:SF26 | SMART:SM01074 | SUPFAM:SSF46785 | SUPFAM:SSF52540 | UniParc:UPI000295717C | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | : | : | : | : | : |
Description
CDC6 - Putative DNA replication initiation protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G33780_001]
Coordinates
chr6:-:32729142..32734700
Molecular Weight (calculated)
54982.9 Da
IEP (calculated)
9.878
GRAVY (calculated)
-0.297
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRSPASLGG SPAAKVPGET KTRADSTPSR KRSRSDCASE SPIKDQQPAK RRSPRRCNGD REENCIGNVS ESVFQCSPKS PRKRLFGPSN QKPKWNPRDP
101: AQMQAAKQAL HLATPPANVV CREVEQKRVI DFCKACIQQS KAGSLYVCGC PGTGKTLSIG KVQEHLLVWS KEEGIQSPDI LTINCTSLTS TTEIFSKMLV
201: KFRPTSKIKN FSPLQHLQKI FSQKGQSSGR MMLIVADEMD YLITKDSSVL HDLFMLTTLP FSRCILIGIA NAIDLADRFL PKLESLNCKP VVITFRAYSK
301: DQILKILQQR LMVLGCDVFQ SAALEFCARK VAAASGDIRR AFDICRSAIE VLEAELRDPT EKKETEIVSF DHMDIAISKS CKSPLVNIIR SLPQHQQVIL
401: CSLVRLFRQR KNSTALGEAS SINRSYLDIC KSTQIRPIGM TEFADMCRAL ADQGLLELAN SRKDRSKKIK LKVDVSDITF AFKGIRFFQN CLE
101: AQMQAAKQAL HLATPPANVV CREVEQKRVI DFCKACIQQS KAGSLYVCGC PGTGKTLSIG KVQEHLLVWS KEEGIQSPDI LTINCTSLTS TTEIFSKMLV
201: KFRPTSKIKN FSPLQHLQKI FSQKGQSSGR MMLIVADEMD YLITKDSSVL HDLFMLTTLP FSRCILIGIA NAIDLADRFL PKLESLNCKP VVITFRAYSK
301: DQILKILQQR LMVLGCDVFQ SAALEFCARK VAAASGDIRR AFDICRSAIE VLEAELRDPT EKKETEIVSF DHMDIAISKS CKSPLVNIIR SLPQHQQVIL
401: CSLVRLFRQR KNSTALGEAS SINRSYLDIC KSTQIRPIGM TEFADMCRAL ADQGLLELAN SRKDRSKKIK LKVDVSDITF AFKGIRFFQN CLE
001: MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SKDQILRILQ ERLVALPFVA FQSNALEICA RKVSAASGDM RKALCVCRSA LEILEIEVRG SIDQEPKGPV PECQVVKMDH MIAALSKTFK
401: SPIVDTIQSL PQHQQIIVCS AAKAFRGSKK DRTIAELNKL YLEICKSSMI TPAGITEFSN MCTVLNDQGI LKLSLARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SKDQILRILQ ERLVALPFVA FQSNALEICA RKVSAASGDM RKALCVCRSA LEILEIEVRG SIDQEPKGPV PECQVVKMDH MIAALSKTFK
401: SPIVDTIQSL PQHQQIIVCS AAKAFRGSKK DRTIAELNKL YLEICKSSMI TPAGITEFSN MCTVLNDQGI LKLSLARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL
Arabidopsis Description
CDC6Cell division control protein 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:O82387]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.