Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02004 | Canola | nucleus, plastid | 65.07 | 19.04 |
| CDX95747 | Canola | plastid | 65.75 | 18.01 |
| AT2G29680.1 | Thale cress | plastid | 60.96 | 16.51 |
| KRG98340 | Soybean | mitochondrion, plastid | 50.0 | 15.4 |
| KRH46438 | Soybean | plastid | 49.32 | 15.25 |
| CDY06693 | Canola | nucleus | 46.58 | 14.14 |
| VIT_06s0004g06300.t01 | Wine grape | plastid | 45.89 | 13.29 |
| TraesCS3B01G400900.1 | Wheat | plastid | 39.73 | 13.18 |
| CDY10263 | Canola | plastid | 44.52 | 12.8 |
| Os01t0856000-02 | Rice | nucleus, plastid | 44.52 | 12.62 |
| HORVU3Hr1G084800.19 | Barley | plastid | 39.73 | 12.45 |
| TraesCS3A01G369000.1 | Wheat | plastid | 41.78 | 12.22 |
| TraesCS3D01G362000.1 | Wheat | plastid | 41.78 | 12.22 |
| EES01777 | Sorghum | plastid | 41.1 | 12.2 |
| GSMUA_Achr6P33780_001 | Banana | nucleus | 41.1 | 12.17 |
| PGSC0003DMT400078033 | Potato | cytosol | 43.84 | 11.98 |
| Solyc06g076860.2.1 | Tomato | nucleus | 43.15 | 11.84 |
| Zm00001d012320_P002 | Maize | plastid | 39.04 | 11.63 |
| Zm00001d042810_P001 | Maize | plastid | 36.99 | 11.04 |
| CDY16697 | Canola | plastid | 19.18 | 3.46 |
| CDY62377 | Canola | plastid | 19.18 | 3.43 |
| CDY71310 | Canola | cytosol | 0.68 | 0.63 |
Protein Annotations
| EnsemblPlants:CDX94733 | EnsemblPlantsGene:GSBRNA2T00158153001 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:P-loop_NTPase | PANTHER:PTHR10763 |
| PFAM:PF13401 | ProteinID:CDX94733 | ProteinID:CDX94733.1 | SUPFAM:SSF52540 | UniParc:UPI0004EE7799 | MapMan:35.1 |
Description
BnaC07g17420D
Coordinates
chrLK031884:-:451583..452669
Molecular Weight (calculated)
16375.9 Da
IEP (calculated)
9.612
GRAVY (calculated)
-0.566
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MKWKSHRRCA VSSPRTPITE VEKESNGKLF DCLDVKSKWN PREFVKACTE QKKAGSLYIC GCPGTGKSLS MEKVRQHAQD WAKQEGLPCL ETVYVNCTSL
101: TKTIDIFSKI LGENETGKKA VASSSPLQQL QIMFSQKQQS PSLKMM
101: TKTIDIFSKI LGENETGKKA VASSSPLQQL QIMFSQKQQS PSLKMM
001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL
Arabidopsis Description
CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.