CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06693	Canola	nucleus	73.82	77.96
AT1G07270.1	Thale cress	plastid	68.11	68.51
CDY02004	Canola	nucleus, plastid	60.24	61.32
CDX95747	Canola	plastid	63.98	60.98
CDY71310	Canola	cytosol	18.7	60.13
KRH46438	Soybean	plastid	50.2	54.03
KRG98340	Soybean	mitochondrion, plastid	50.0	53.59
VIT_06s0004g06300.t01	Wine grape	plastid	52.17	52.58
TraesCS3B01G400900.1	Wheat	plastid	43.9	50.68
Solyc06g076860.2.1	Tomato	nucleus	52.17	49.81
GSMUA_Achr6P33780_001	Banana	nucleus	48.23	49.7
PGSC0003DMT400078033	Potato	cytosol	52.17	49.63
Zm00001d042810_P001	Maize	plastid	45.87	47.65
Zm00001d012320_P002	Maize	plastid	45.67	47.35
HORVU3Hr1G084800.19	Barley	plastid	43.31	47.21
EES01777	Sorghum	plastid	45.67	47.15
TraesCS3D01G362000.1	Wheat	plastid	46.26	47.09
TraesCS3A01G369000.1	Wheat	plastid	46.06	46.89
Os01t0856000-02	Rice	nucleus, plastid	45.47	44.85
CDX94733	Canola	cytosol	12.8	44.52
CDY16697	Canola	plastid	18.9	11.87
CDY62377	Canola	plastid	18.9	11.76

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.2.1.4	Gene3D:3.40.50.300	GO:A0A078FDV2	UniProt:A0A078FDV2	InterPro:AAA+_ATPase
EnsemblPlants:CDY10263	ProteinID:CDY10263	ProteinID:CDY10263.1	InterPro:Cdc6/18	InterPro:Cdc6_C	GO:GO:0006139
GO:GO:0006259	GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0051301	EnsemblPlantsGene:GSBRNA2T00032090001	InterPro:IPR036388	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401
PIRSF:PIRSF001767	PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785	SUPFAM:SSF52540
UniParc:UPI0004EE9A89	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

BnaC05g05060DBnaC05g05060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDV2]

Coordinates

chrLK032001:-:817531..822530

Molecular Weight (calculated)

56636.7 Da

IEP (calculated)

8.774

GRAVY (calculated)

-0.185

Length

508 amino acids

Sequence
(BLAST)

001: MPTIAGPGSS SCNHIVAAGS EKSESIETPQ KRKLRSEEVN LLSEDTISTP KKLKSRRRIA VSNLRTPEKE VKQYTNENLA VENLSDCLGS ESNWNTRDEE
101: QMRAVKEALH VSKAPSTIVC REDEQRRVFE FVKGCLDQQK AGSLYICGCP GTGKSLSMER VVQRVGDLVK AGRFATCGHI VNCTSLTKTT DIFSKVLEIA
201: EPLKKDDCYS SPLHHLQSLF SQKQESSSRM MLIIADEMDF LITKDRGVLH DLFMLTTLPF SRCILIGTLC FFFSRVANAI DLADRFLPKL KSLNCKPVVI
301: TFRAYSKDQI LKILHERLMV LPYVAFQSNA LELCARKVAA ASGDMRKALS VCRSALQILE SDIRGLPGPE SQGPTPADPV VRIDHMATAL SKTFKSPVVD
401: TIQSLPQHQQ IIICSAAKAF RGTKKDATIG ELNKLYLEIC KSWAISPAGI TDFTNMCTVL NDQVTTIADS YRLYVARRDK VKRVSLRVDE SDITFSHQGI
501: RFFRNCLL

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.