Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06693 | Canola | nucleus | 69.11 | 72.56 |
| Bra015569.1-P | Field mustard | nucleus | 69.5 | 71.05 |
| CDY10263 | Canola | plastid | 68.51 | 68.11 |
| AT2G29680.1 | Thale cress | plastid | 69.11 | 64.75 |
| KRH46438 | Soybean | plastid | 53.07 | 56.78 |
| KRG98340 | Soybean | mitochondrion, plastid | 52.67 | 56.12 |
| VIT_06s0004g06300.t01 | Wine grape | plastid | 55.05 | 55.16 |
| TraesCS3B01G400900.1 | Wheat | plastid | 47.33 | 54.32 |
| Solyc06g076860.2.1 | Tomato | nucleus | 55.05 | 52.26 |
| PGSC0003DMT400078033 | Potato | cytosol | 54.65 | 51.69 |
| HORVU3Hr1G084800.19 | Barley | plastid | 47.52 | 51.5 |
| GSMUA_Achr6P33780_001 | Banana | nucleus | 49.31 | 50.51 |
| EES01777 | Sorghum | plastid | 48.91 | 50.2 |
| TraesCS3D01G362000.1 | Wheat | plastid | 49.11 | 49.7 |
| Zm00001d012320_P002 | Maize | plastid | 47.92 | 49.39 |
| TraesCS3A01G369000.1 | Wheat | plastid | 48.71 | 49.3 |
| Os01t0856000-02 | Rice | nucleus, plastid | 49.51 | 48.54 |
| Zm00001d042810_P001 | Maize | plastid | 46.93 | 48.47 |
| AT4G14700.1 | Thale cress | plastid | 20.2 | 12.61 |
| AT4G12620.1 | Thale cress | plastid | 20.2 | 12.55 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:13.2.1.4 | Gene3D:3.40.50.300 | EntrezGene:837238 | InterPro:AAA+_ATPase | ProteinID:AAF82194.1 |
| ProteinID:AEE28099.1 | EMBL:AJ310357 | EMBL:AJ429229 | ArrayExpress:AT1G07270 | EnsemblPlantsGene:AT1G07270 | RefSeq:AT1G07270 |
| TAIR:AT1G07270 | RefSeq:AT1G07270-TAIR-G | EnsemblPlants:AT1G07270.1 | TAIR:AT1G07270.1 | InterPro:Cdc6/18 | InterPro:Cdc6_C |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006270 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016758 | GO:GO:0051301 | InterPro:IPR036388 | RefSeq:NP_172207.2 | InterPro:P-loop_NTPase | PFAM:PF09079 |
| PFAM:PF13401 | PIRSF:PIRSF001767 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0001016 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR10763 | UniProt:Q8W032 | SMART:SM01074 | SUPFAM:SSF46785 | SUPFAM:SSF52540 | UniParc:UPI00000A72FB |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | : | : | : | : |
Description
CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
Coordinates
chr1:-:2229444..2233017
Molecular Weight (calculated)
55728.7 Da
IEP (calculated)
8.962
GRAVY (calculated)
-0.183
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.