Factsheet for PGSC0003DMT400033355

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008733
PGSC0003DMT400025551
PGSC0003DMT400028257
PGSC0003DMT400039751
PGSC0003DMT400039753
PGSC0003DMT400051857
PGSC0003DMT400069464
PGSC0003DMT400070712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	PGSC0003DMT400008733	AT1G26840.1	16179646
AT4G12620.1	PGSC0003DMT400069464	AT2G37560.1	16179646
AT4G12620.1	PGSC0003DMT400051857	AT5G13060.1	18818695
AT4G14700.1	PGSC0003DMT400070712	AT3G04620.1	20706207
AT4G14700.1	PGSC0003DMT400028257	AT3G54710.1	18818695
AT4G14700.1	PGSC0003DMT400025551	AT4G16630.1	20706207
AT4G14700.1	PGSC0003DMT400051857	AT5G13060.1	18818695
AT4G14700.1	PGSC0003DMT400039751	AT5G16690.1	18818695
AT4G14700.1	PGSC0003DMT400039753	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0175g00030.t01	Wine grape	extracellular	50.55	29.3
CDY16697	Canola	plastid	75.82	8.53
Bra029471.1-P	Field mustard	plastid	75.82	8.49
CDY62377	Canola	plastid	75.82	8.46
AT4G12620.1	Thale cress	plastid	73.63	8.24
AT4G14700.1	Thale cress	plastid	72.53	8.16
VIT_06s0004g02050.t01	Wine grape	nucleus	80.22	8.04
GSMUA_Achr8P31340_001	Banana	nucleus	70.33	8.0
KRH23133	Soybean	nucleus	71.43	7.64
VIT_06s0004g00530.t01	Wine grape	cytosol	53.85	7.59
KRH10202	Soybean	nucleus	70.33	7.49
OQU75979	Sorghum	plastid	61.54	6.91
TraesCS7D01G153500.1	Wheat	plastid	62.64	6.88
TraesCS7A01G151700.1	Wheat	plastid	57.14	6.64
TraesCS7B01G055600.1	Wheat	nucleus	62.64	6.43
Zm00001d037086_P006	Maize	nucleus, plastid	59.34	6.1
HORVU7Hr1G031190.2	Barley	nucleus	61.54	5.92
Zm00001d045080_P001	Maize	plastid	50.55	5.62
PGSC0003DMT400078033	Potato	cytosol	19.78	3.37
PGSC0003DMT400033353	Potato	nucleus, plastid	9.89	1.2
HORVU3Hr1G033880.2	Barley	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400033355	EnsemblPlantsGene:PGSC0003DMG402012812	InterPro:ORC1	PANTHER:PTHR10763	PANTHER:PTHR10763:SF23	PGSC:PGSC0003DMG402012812
UniParc:UPI0002952BF9	UniProt:M1AZ05	MapMan:35.1	:	:	:

Description

Origin recognition complex 1b protein [Source:PGSC_GENE;Acc:PGSC0003DMG402012812]

Coordinates

chr3:-:1907976..1914368

Molecular Weight (calculated)

10211.5 Da

IEP (calculated)

7.850

GRAVY (calculated)

-0.085

Length

91 amino acids

Sequence
(BLAST)

1: MVYEGHKTGM SETTFDKLAI TVSCLCTSNG EKFPGWDVLL KVGCKLGECR ILLCEPGVKH KLQKLQLNFP SDDVSFALKD SKELSWLARY L

Best Arabidopsis Sequence Match ( AT4G12620.1 )
(BLAST)

001: MASTPRAKTF KSPTKTPSNI YRKSYLSPSS TSHTPQTPET HTPLRRSARH VSRKIDLGND PIDAPGNDPI EGMNLIRKRE RAPRKPTTDV VPSKSKKTET
101: PKKKKKIDSF TPVSPIRSET IKKTKKKKRV YYNKVEFDET EFEIGDDVYV KRREDSNSDE EEDPEIEDCQ ICFKSDTNIM IECDDCLGGF HLKCLKPPLK
201: EVPEGDWICQ FCEVKKSGQS QTLDLPKPPE GKKLARTMRE KLLSGDLWAA RIDKLWKEVD DGVYWIRARW YMIPEETVSG RQPHNLKREL YLTNDFADIE
301: MECILRHCSV KCPKEFSKAS NDGDDVFLCE YEYDVHWRSF KRLAELADGD SDSDQEWNGR KEEEVDDSDE EMELDDEVLK SKRGGLTSAR GGANSRKGRF
401: FGVEKVGMKL IPEHVRCHKQ SELEKAKATL LLATRPKSLP CRSKEMEEIT SFIKGSISDD QCLGRCMYIH GVPGTGKTIS VLSVMKNLKA EVEEGSVSPY
501: CFVEINGLKL ASPENIYSVI YEALSGHRVG WKKALQCLNE RFAEGKRIGK EDEKPCILLI DELDLLVTRN QSVLYNILDW PTKPNSKLVV LGIANTMDLP
601: EKLLPRISSR MGIQRLCFGP YNHTQLQEII STRLNGIDAF EKTAIEFASR KVAAISGDAR RALEICRRAA EVADHRLNTN KSAKNQLVIM ADVEAAIQEM
701: FQAPHIQVMK SVSKLSKIFL TAMVHELYKT GMAETTFDRV ATTVSSICLT NGEAFPGWDI LLKIGCDLGE CRIILCEPGE KHRLQKLQLN FPSDDVAFAL
801: KDNKDLPWLA NYL

Arabidopsis Description

ORC1BUNE13 [Source:UniProtKB/TrEMBL;Acc:A0A178UTR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.