Factsheet for VIT_06s0004g02050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02290.t01
VIT_07s0005g03090.t01
VIT_07s0104g00020.t01
VIT_10s0003g03910.t01
VIT_16s0039g01430.t01
VIT_16s0039g01440.t01
VIT_18s0001g10740.t01
VIT_18s0001g14540.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	VIT_01s0026g02290.t01	AT1G26840.1	16179646
AT4G12620.1	VIT_18s0001g10740.t01	AT2G37560.1	16179646
AT4G12620.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695
AT4G14700.1	VIT_10s0003g03910.t01	AT1G30210.1	18818695
AT4G14700.1	VIT_07s0005g03090.t01	AT3G54710.1	18818695
AT4G14700.1	VIT_18s0001g14540.t01	AT4G16630.1	20706207
AT4G14700.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695
AT4G14700.1	VIT_16s0039g01430.t01	AT5G16690.1	18818695
AT4G14700.1	VIT_16s0039g01440.t01	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00530.t01	Wine grape	cytosol	63.88	89.78
PGSC0003DMT400033355	Potato	cytosol	8.04	80.22
Solyc03g006420.2.1	Tomato	nucleus	64.21	70.16
KRH23133	Soybean	nucleus	63.99	68.27
KRH10202	Soybean	nucleus	63.44	67.45
PGSC0003DMT400033353	Potato	nucleus, plastid	55.51	67.38
GSMUA_Achr8P31340_001	Banana	nucleus	57.71	65.5
CDY16697	Canola	plastid	57.27	64.28
AT4G14700.1	Thale cress	plastid	56.94	63.91
CDY62377	Canola	plastid	57.16	63.6
Bra029471.1-P	Field mustard	plastid	56.83	63.47
AT4G12620.1	Thale cress	plastid	56.06	62.61
VIT_13s0175g00030.t01	Wine grape	extracellular	10.57	61.15
OQU75979	Sorghum	plastid	54.52	61.11
Zm00001d045080_P001	Maize	plastid	53.3	59.17
TraesCS7D01G153500.1	Wheat	plastid	53.52	58.62
TraesCS7A01G151700.1	Wheat	plastid	50.44	58.49
Zm00001d037086_P006	Maize	nucleus, plastid	54.07	55.48
TraesCS7B01G055600.1	Wheat	nucleus	53.41	54.74
HORVU7Hr1G031190.2	Barley	nucleus	53.74	51.59
HORVU3Hr1G033880.2	Barley	plastid	10.24	35.77
VIT_06s0004g06300.t01	Wine grape	plastid	12.33	22.22

Protein Annotations

Gene3D:1.10.8.1280	EntrezGene:100244935	wikigene:100244935	MapMan:13.2.1.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:BAH_dom	ProteinID:CCB43713	ProteinID:CCB43713.1	UniProt:F6GU49
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083
InterPro:IPR019787	EntrezGene:LOC100244935	wikigene:LOC100244935	InterPro:ORC1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR10763
PANTHER:PTHR10763:SF23	SMART:SM00249	SMART:SM00382	SMART:SM00439	SUPFAM:SSF52540	SUPFAM:SSF57903
TIGR:TC55657	TIGR:TC62300	TMHMM:TMhelix	UniParc:UPI000210834F	ArrayExpress:VIT_06s0004g02050	EnsemblPlantsGene:VIT_06s0004g02050
EnsemblPlants:VIT_06s0004g02050.t01	unigene:Vvi.11572	RefSeq:XP_002282859	RefSeq:XP_002282859.2	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:2493504..2521397

Molecular Weight (calculated)

103318.0 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.495

Length

908 amino acids

Sequence
(BLAST)

001: MLTFNWDSRK ENKKFRKMIF PQKIHPPFDF RGNSSSFDFR ENPFKTPKEN QKVCFSFASC VFWICFKGLF AVVPLDLNFT NPKSTIFEPD FVSCARAVMA
101: ETPRKSFHSP RKAHKPSPST PIIPQTPQTV TPSRSSRQVS SPDPSDLRRS SRRSSLQFLE PEKRSSKATK YVKKGERSKL PVTPDVSEAR KRKSPDEGNV
201: VTRARVSRNA GLMRKKRVYY KKVVYDGGEF AVGDDVYVKR RENASSDDEE LQVEECRVCF KSGRAVMIEC DDCLGGFHLK CLKPRLKEVP EGDWICQFCE
301: ARKLGKEVVL PKPPKGKKRK RTAREKLLSS DLWTAHIENI WKEVDGTYWF RGRWYIIPEE TAAGRQSHNL RRELYRTNDF ADIEMESIIR LCYVMSPKEF
401: TKANNEGDDI FLCEYEYDIH WHSFKRLAEI NNGEEGNEEA DNDVDWDYGK DSGSDTEEDM EYEEENVNNL PSGPSPAHAV AANSWKGRIF GLKKIGTKKI
501: PGHVRCHKQT ELERAKATLL LATLPKSLPC RTKEMEEITA FIKGAICNDQ CLGRCLYIHG VPGTGKTMSV LSVMRNLRSE VDAGSIKPYC FVDINGLKLA
601: SPENIYRVIY EALSGHRVGW KKALHLLNER FADESKIAKE EIRPCILLID ELDLLVTRNQ SVLYNILDWP TKPHSKLIVI GIANTMDLPE KLLPRISSRM
701: GIQRLCFGPY NYQQLQEIIS SRLKGIDAFE RQAIEFASRK VAAISGDARR ALEICRRAAE LADYHIKKLT SPPDSSSEGK ALVGMAEVEA AIQEMFQAPQ
801: IQVMKSSSKL SKIFLVAMVH ELYQTGMAET TFKKLSVTVS CLCTSNGEKF PGWDTLLRVG CKLGECRIIL CEAGAKHRLQ KLQLNFPSDD VAFALKDDKE
901: LPWLAKYL

Best Arabidopsis Sequence Match ( AT4G14700.1 )
(BLAST)

001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL

Arabidopsis Description

ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.