Factsheet for VIT_13s0175g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 2
extracellular 4
mitochondrion 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02290.t01
VIT_07s0005g03090.t01
VIT_07s0104g00020.t01
VIT_10s0003g03910.t01
VIT_16s0039g01430.t01
VIT_16s0039g01440.t01
VIT_18s0001g10740.t01
VIT_18s0001g14540.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	VIT_01s0026g02290.t01	AT1G26840.1	16179646
AT4G12620.1	VIT_18s0001g10740.t01	AT2G37560.1	16179646
AT4G12620.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695
AT4G14700.1	VIT_10s0003g03910.t01	AT1G30210.1	18818695
AT4G14700.1	VIT_07s0005g03090.t01	AT3G54710.1	18818695
AT4G14700.1	VIT_18s0001g14540.t01	AT4G16630.1	20706207
AT4G14700.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695
AT4G14700.1	VIT_16s0039g01430.t01	AT5G16690.1	18818695
AT4G14700.1	VIT_16s0039g01440.t01	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033355	Potato	cytosol	29.3	50.55
VIT_06s0004g00530.t01	Wine grape	cytosol	48.41	11.76
VIT_06s0004g02050.t01	Wine grape	nucleus	61.15	10.57
AT4G12620.1	Thale cress	plastid	54.14	10.46
CDY16697	Canola	plastid	53.5	10.38
Bra029471.1-P	Field mustard	plastid	53.5	10.33
CDY62377	Canola	plastid	53.5	10.29
AT4G14700.1	Thale cress	plastid	51.59	10.01
GSMUA_Achr8P31340_001	Banana	nucleus	50.96	10.0
Solyc03g006420.2.1	Tomato	nucleus	52.87	9.99
KRH10202	Soybean	nucleus	54.14	9.95
KRH23133	Soybean	nucleus	53.5	9.87
OQU75979	Sorghum	plastid	43.95	8.52
TraesCS7A01G151700.1	Wheat	plastid	42.04	8.43
TraesCS7D01G153500.1	Wheat	plastid	42.04	7.96
Zm00001d045080_P001	Maize	plastid	41.4	7.95
Zm00001d037086_P006	Maize	nucleus, plastid	43.31	7.68
TraesCS7B01G055600.1	Wheat	nucleus	42.04	7.45
HORVU7Hr1G031190.2	Barley	nucleus	41.4	6.87
VIT_06s0004g06300.t01	Wine grape	plastid	15.92	4.96
PGSC0003DMT400033353	Potato	nucleus, plastid	13.38	2.81
HORVU3Hr1G033880.2	Barley	plastid	0.0	0.0

Protein Annotations

ArrayExpress:VIT_13s0175g00030	EMBL:FN596766	EnsemblPlants:VIT_13s0175g00030.t01	EnsemblPlantsGene:VIT_13s0175g00030	InterPro:ORC1	PANTHER:PTHR10763
PANTHER:PTHR10763:SF23	ProteinID:CCB62771	ProteinID:CCB62771.1	UniParc:UPI0002108EDC	UniProt:F6I753	MapMan:35.1

Description

No Description!

Coordinates

chr13:+:14859083..14865012

Molecular Weight (calculated)

18217.7 Da

IEP (calculated)

8.633

GRAVY (calculated)

0.252

Length

157 amino acids

Sequence
(BLAST)

001: MSFIIFLCFP GKAPVGMAEV EAAIQAMFQA PHIQVMKSST KLSKIFLVAM VYELYQTGMV ETTFEKGNNF RIMLVFLLNK FFHIAVVSDC FMPLYRQWRK
101: VPWMRHTLES WLGECRIILC EAGATHRLQK LQLNFPSDDV AFALKDDKEL PWLAKYL

Best Arabidopsis Sequence Match ( AT4G12620.1 )
(BLAST)

001: MASTPRAKTF KSPTKTPSNI YRKSYLSPSS TSHTPQTPET HTPLRRSARH VSRKIDLGND PIDAPGNDPI EGMNLIRKRE RAPRKPTTDV VPSKSKKTET
101: PKKKKKIDSF TPVSPIRSET IKKTKKKKRV YYNKVEFDET EFEIGDDVYV KRREDSNSDE EEDPEIEDCQ ICFKSDTNIM IECDDCLGGF HLKCLKPPLK
201: EVPEGDWICQ FCEVKKSGQS QTLDLPKPPE GKKLARTMRE KLLSGDLWAA RIDKLWKEVD DGVYWIRARW YMIPEETVSG RQPHNLKREL YLTNDFADIE
301: MECILRHCSV KCPKEFSKAS NDGDDVFLCE YEYDVHWRSF KRLAELADGD SDSDQEWNGR KEEEVDDSDE EMELDDEVLK SKRGGLTSAR GGANSRKGRF
401: FGVEKVGMKL IPEHVRCHKQ SELEKAKATL LLATRPKSLP CRSKEMEEIT SFIKGSISDD QCLGRCMYIH GVPGTGKTIS VLSVMKNLKA EVEEGSVSPY
501: CFVEINGLKL ASPENIYSVI YEALSGHRVG WKKALQCLNE RFAEGKRIGK EDEKPCILLI DELDLLVTRN QSVLYNILDW PTKPNSKLVV LGIANTMDLP
601: EKLLPRISSR MGIQRLCFGP YNHTQLQEII STRLNGIDAF EKTAIEFASR KVAAISGDAR RALEICRRAA EVADHRLNTN KSAKNQLVIM ADVEAAIQEM
701: FQAPHIQVMK SVSKLSKIFL TAMVHELYKT GMAETTFDRV ATTVSSICLT NGEAFPGWDI LLKIGCDLGE CRIILCEPGE KHRLQKLQLN FPSDDVAFAL
801: KDNKDLPWLA NYL

Arabidopsis Description

ORC1BUNE13 [Source:UniProtKB/TrEMBL;Acc:A0A178UTR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.