Factsheet for PGSC0003DMT400033353

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008733
PGSC0003DMT400025551
PGSC0003DMT400028257
PGSC0003DMT400039751
PGSC0003DMT400039753
PGSC0003DMT400051857
PGSC0003DMT400069464
PGSC0003DMT400070712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	PGSC0003DMT400008733	AT1G26840.1	16179646
AT4G12620.1	PGSC0003DMT400069464	AT2G37560.1	16179646
AT4G12620.1	PGSC0003DMT400051857	AT5G13060.1	18818695
AT4G14700.1	PGSC0003DMT400070712	AT3G04620.1	20706207
AT4G14700.1	PGSC0003DMT400028257	AT3G54710.1	18818695
AT4G14700.1	PGSC0003DMT400025551	AT4G16630.1	20706207
AT4G14700.1	PGSC0003DMT400051857	AT5G13060.1	18818695
AT4G14700.1	PGSC0003DMT400039751	AT5G16690.1	18818695
AT4G14700.1	PGSC0003DMT400039753	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006420.2.1	Tomato	nucleus	93.98	84.6
VIT_06s0004g00530.t01	Wine grape	cytosol	55.48	64.24
KRH23133	Soybean	nucleus	64.71	56.87
VIT_06s0004g02050.t01	Wine grape	nucleus	67.38	55.51
KRH10202	Soybean	nucleus	63.37	55.5
AT4G14700.1	Thale cress	plastid	59.76	55.25
OQU75979	Sorghum	plastid	58.96	54.44
CDY16697	Canola	plastid	58.82	54.39
GSMUA_Achr8P31340_001	Banana	nucleus	58.02	54.25
CDY62377	Canola	plastid	58.56	53.68
Bra029471.1-P	Field mustard	plastid	58.29	53.63
Zm00001d045080_P001	Maize	plastid	58.16	53.18
AT4G12620.1	Thale cress	plastid	57.22	52.64
TraesCS7A01G151700.1	Wheat	plastid	53.48	51.09
TraesCS7D01G153500.1	Wheat	plastid	56.55	51.03
Zm00001d037086_P006	Maize	nucleus, plastid	57.09	48.25
TraesCS7B01G055600.1	Wheat	nucleus	56.55	47.74
HORVU7Hr1G031190.2	Barley	nucleus	56.82	44.93
HORVU3Hr1G033880.2	Barley	plastid	12.17	35.0
PGSC0003DMT400078033	Potato	cytosol	11.9	16.67
VIT_13s0175g00030.t01	Wine grape	extracellular	2.81	13.38
PGSC0003DMT400033355	Potato	cytosol	1.2	9.89

Protein Annotations

Gene3D:1.10.8.1280	MapMan:13.2.1.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:BAH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005524
GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	UniProt:M1AZ04	InterPro:ORC1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00628	PFAM:PF01426	EnsemblPlantsGene:PGSC0003DMG401012812	PGSC:PGSC0003DMG401012812
EnsemblPlants:PGSC0003DMT400033353	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR10763	PANTHER:PTHR10763:SF23
SMART:SM00249	SMART:SM00382	SMART:SM00439	SUPFAM:SSF52540	SUPFAM:SSF57903	UniParc:UPI00029674E8
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Origin recognition complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401012812]

Coordinates

chr3:-:1914450..1918492

Molecular Weight (calculated)

84170.1 Da

IEP (calculated)

8.462

GRAVY (calculated)

-0.515

Length

748 amino acids

Sequence
(BLAST)

001: MDFGESTPKK KSKQSLNTTP IKQQNPLPIS SLSPSDPIYP KTPQTLNPTN RRRSVRLSST PQTPAPAPLS PPTSSRRGKS LNFTPKNGTN SAKRRKSKVA
101: DLTPVLTPGL TESKRKRKCV ERKNVGVEKR SVSRSCKKRV YYKKVVFDGG EFGVGDDVYV KRREDAGSDN EDPEVEECRI CYKPAGRVIM IECDECLGGF
201: HLKCLKPPLK EVPEGDWICV YCEAKKLGKI VEMPAPPKGK KRIRTAKEKL LDSDLWAARI ESIWKEVDGT YWFRAHWYII PEETDAGRQP HNLRRELYRT
301: NDFADVEMDS VIRHCFVLSP KEFEKARNDG DDVFLCEYEY DIHWHSFKRI SEIEDNAVDD DEAENDGDWN SCEDQDSDGE DDVEYKREKL SNLLTRPSPA
401: HPLAANSRKG RFFGLQKIGA KKIPEHVRSH KLTELEKAKG TLLLATLPKS LPCRTKEMEE ITTFVKGAIC DDQCLGRCLY IHGVPGTGKT MSVLAVMRSL
501: RCEVDAGSIK PYCFVEINGL KLASPENIYS VIYEALNGHK VGWKKALHSL NERFSNVAEH SKEENRPCIL LIDELDLLVT RNQAVLYNIL DWPTKPHSKL
601: IVIGIANTMD LPEKLLPRIS SRMGIQRLCF GPYNYQQLQE IILTRLNGIE AFEKPAIEFA SRKVAAVSGD ARRALEICRR AAELADYRVK KLLAIPDSAA
701: AGKMLVRMAD VEAAIQEMFQ APHIQVSPKG TPCDVISTVI LASGDIAC

Best Arabidopsis Sequence Match ( AT4G14700.1 )
(BLAST)

001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL

Arabidopsis Description

ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.