Factsheet for VIT_07s0005g03090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g01610.t01
VIT_06s0080g00460.t01
VIT_07s0005g03090.t01
VIT_07s0104g00020.t01
VIT_17s0000g04830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	VIT_06s0061g01610.t01	AT1G08260.1	22773747
AT2G31270.1	VIT_07s0005g03090.t01	AT2G31270.1	22773747
AT2G31270.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695
AT2G31270.1	VIT_17s0000g04830.t01	AT5G22110.1	22773747
AT3G54710.1	VIT_06s0061g01610.t01	AT1G08260.1	22773747
AT3G54710.1	VIT_06s0080g00460.t01	AT2G27470.1	22773747
AT3G54710.1	VIT_07s0005g03090.t01	AT3G54710.1	22773747
AT3G54710.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695
AT3G54710.1	VIT_17s0000g04830.t01	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008510.2.1	Tomato	nucleus, plastid	48.35	47.86
PGSC0003DMT400028257	Potato	nucleus, plastid	47.31	46.83
Solyc01g006140.2.1	Tomato	nucleus	43.85	44.23
CDY67450	Canola	cytosol	20.45	44.03
CDY23948	Canola	nucleus, plastid	40.73	42.5
GSMUA_Achr10P...	Banana	nucleus	39.86	42.2
CDX84793	Canola	nucleus, plastid	39.69	41.56
Bra022834.1-P	Field mustard	nucleus, plastid	39.69	41.56
CDY24744	Canola	nucleus	41.77	41.13
AT2G31270.1	Thale cress	nucleus, plastid	40.03	40.46
KRH32170	Soybean	plastid	41.42	40.1
CDY10780	Canola	nucleus	40.73	40.03
Bra018272.1-P	Field mustard	nucleus	40.55	39.86
CDY15409	Canola	nucleus, plastid	33.28	38.71
KRH19542	Soybean	nucleus	40.9	38.13
HORVU2Hr1G003370.11	Barley	cytosol	30.85	38.03
Bra014795.1-P	Field mustard	cytosol	22.88	37.5
Bra014797.1-P	Field mustard	cytosol, plastid	29.64	37.17
CDX76137	Canola	cytosol, plastid	30.33	37.08
CDX76134	Canola	cytosol, plastid	29.81	36.83
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	27.73	36.61
EER89201	Sorghum	nucleus	36.05	36.17
AT3G54710.1	Thale cress	cytosol, plastid	30.33	36.01
CDY13226	Canola	cytosol, plastid	29.64	35.85
Zm00001d045354_P002	Maize	nucleus	35.36	35.6
TraesCS2D01G023000.1	Wheat	cytosol, plastid	33.28	35.56
VIT_16s0039g00480.t01	Wine grape	cytosol	8.32	34.04
TraesCS2A01G022200.1	Wheat	plastid	33.45	33.39
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	33.97	33.33
TraesCS2B01G030600.1	Wheat	plastid	33.45	33.28
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	21.14	31.69
HORVU4Hr1G047140.6	Barley	plastid	10.05	26.61
VIT_16s0039g00430.t01	Wine grape	mitochondrion	16.46	26.03
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	38.3	23.14

Protein Annotations

Gene3D:1.10.10.1420	EntrezGene:100263560	wikigene:100263560	MapMan:13.2.1.3	ProteinID:CCB60094	ProteinID:CCB60094.1
InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	UniProt:F6HZH9	EMBL:FN596502	GO:GO:0000076	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007049	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658
GO:GO:0009987	GO:GO:0016043	GO:GO:0019901	GO:GO:0048229	GO:GO:0051276	GO:GO:0070182
EntrezGene:LOC100263560	wikigene:LOC100263560	PFAM:PF08839	PFAM:PF16679	PANTHER:PTHR28637	PANTHER:PTHR28637:SF5
SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI000210A2B7	ArrayExpress:VIT_07s0005g03090	EnsemblPlantsGene:VIT_07s0005g03090	EnsemblPlants:VIT_07s0005g03090.t01
unigene:Vvi.22964	InterPro:WH_DNA-bd_sf	RefSeq:XP_002263743	RefSeq:XP_002263743.1	RefSeq:XP_002263743.2	SEG:seg

Description

No Description!

Coordinates

chr7:-:5913709..5917774

Molecular Weight (calculated)

64406.4 Da

IEP (calculated)

9.462

GRAVY (calculated)

-0.541

Length

577 amino acids

Sequence
(BLAST)

001: MSASAFNPFK SKKIAKSSSK VDQTKAPDHD PWSSKTPEKP ALPPRRGRNG SVALSIKEVK QMATTLTKSA PVQSARTAPV GSARTASVDP VASPSRQKNV
101: NRSMKLPEKY EMLAQFFDSL DSSIRLLRLK GSMSTFTNIC PKIECLTDRR FSHGNLAQLK YILPEAIVIK KVLMLDERTS CMKPDLLITL DVDGIENSKL
201: ESGNSHLRKI FRARLLDFAK AHPEGDEIPE ETLPEPFSQS KQDLHSNMIK DSYSSLPAET SCDVLMEQPQ AVASHLSRCF QRRFSQKISG EAENSNKKPA
301: NFSLQLSDLP VQDPYLNKSS SNEEVVATVA PSPVKSSSPA HLPLSHPPAT PLKKTDSTDN QDFCSMKTPD IQVTPAKLAF SPARLMTMTP SLQPPKRCLM
401: SPHDDSTNSP NKLVRRPARS RSLKFDTPVK GAEIKEEVNE KGSLSVDNDI LDILPENLLE SIREKERKAI EEQDPAISQA KRRREMIVGL PKLFNMIHFL
501: FQSINRSVVT KEELMHKILA SHCDIVDRRE VEEQLKLLQE LVPEWISEKL ASSGDLLLCI KKTSSPESIR QRLMEAK

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.