Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039343 | Potato | nucleus | 42.55 | 11.65 |
| KRH09362 | Soybean | mitochondrion | 36.88 | 10.66 |
| KRH38848 | Soybean | nucleus | 36.17 | 9.46 |
| VIT_07s0005g03090.t01 | Wine grape | nucleus | 34.04 | 8.32 |
| Solyc03g019960.2.1 | Tomato | nucleus | 25.53 | 7.64 |
| Os10t0489900-01 | Rice | nucleus | 28.37 | 6.98 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 26.95 | 6.67 |
| EES11553 | Sorghum | nucleus | 26.24 | 6.58 |
| Zm00001d026469_P002 | Maize | nucleus | 26.24 | 6.58 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 25.53 | 6.45 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 25.53 | 6.45 |
| EER91446 | Sorghum | nucleus | 25.53 | 6.42 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 25.53 | 6.35 |
| Zm00001d002056_P006 | Maize | extracellular | 24.82 | 6.02 |
| Zm00001d032621_P001 | Maize | nucleus | 21.28 | 5.21 |
| KRH52336 | Soybean | cytosol | 8.51 | 5.04 |
| HORVU1Hr1G044120.10 | Barley | plastid | 21.28 | 4.78 |
| Zm00001d046390_P001 | Maize | cytosol | 7.09 | 4.15 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 10.64 | 4.11 |
| Zm00001d026393_P001 | Maize | cytosol | 4.96 | 2.66 |
| KRH30328 | Soybean | mitochondrion | 2.13 | 2.56 |
Protein Annotations
| ArrayExpress:VIT_16s0039g00480 | EMBL:FN595750 | EnsemblPlants:VIT_16s0039g00480.t01 | EnsemblPlantsGene:VIT_16s0039g00480 | EntrezGene:100244348 | EntrezGene:LOC100244348 |
| Gene3D:1.10.10.1420 | InterPro:Cdt1_C | PANTHER:PTHR28637 | PANTHER:PTHR28637:SF5 | PFAM:PF16679 | ProteinID:CCB50529 |
| ProteinID:CCB50529.1 | RefSeq:XP_002267629 | RefSeq:XP_002267629.2 | SEG:seg | unigene:Vvi.23024 | UniParc:UPI000210877E |
| UniProt:F6HE83 | wikigene:100244348 | wikigene:LOC100244348 | MapMan:13.2.1.3 | : | : |
Description
No Description!
Coordinates
chr16:+:226575..229810
Molecular Weight (calculated)
16180.6 Da
IEP (calculated)
5.245
GRAVY (calculated)
-0.062
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIPLAQEFS ARYSNTVEES NDCTSNAHEM KQRVLVTSQQ VSTCLVDLVA LIHRIFLSLG CFSITKEELV HKIIMNNCDI IERREIEEQI ELLEKLIPEW
101: IFRKLAPCGD LLYSIRKESN LDSVCARLCN VGQDCHRGWS P
101: IFRKLAPCGD LLYSIRKESN LDSVCARLCN VGQDCHRGWS P
001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
Arabidopsis Description
CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.