Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G173500.1 | Wheat | nucleus | 96.77 | 96.77 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 89.07 | 87.65 |
| HORVU1Hr1G044120.10 | Barley | plastid | 81.9 | 72.89 |
| EER91446 | Sorghum | nucleus | 60.04 | 59.71 |
| Os10t0489900-01 | Rice | nucleus | 59.32 | 57.77 |
| EES11553 | Sorghum | nucleus | 57.35 | 56.94 |
| Zm00001d026469_P002 | Maize | nucleus | 57.35 | 56.94 |
| Zm00001d002056_P006 | Maize | extracellular | 56.27 | 54.04 |
| Zm00001d032621_P001 | Maize | nucleus | 55.38 | 53.65 |
| Zm00001d046390_P001 | Maize | cytosol | 22.76 | 52.7 |
| Zm00001d026393_P001 | Maize | cytosol | 24.01 | 50.95 |
| KRH30328 | Soybean | mitochondrion | 9.14 | 43.59 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 34.41 | 33.68 |
| KRH52336 | Soybean | cytosol | 11.83 | 27.73 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 17.74 | 27.12 |
| PGSC0003DMT400039343 | Potato | nucleus | 23.84 | 25.83 |
| KRH38848 | Soybean | nucleus | 24.91 | 25.79 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 6.45 | 25.53 |
| Solyc03g019960.2.1 | Tomato | nucleus | 21.51 | 25.48 |
| TraesCS2B01G030600.1 | Wheat | plastid | 25.99 | 25.0 |
| KRH09362 | Soybean | mitochondrion | 21.33 | 24.39 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G183800.1 | EnsemblPlantsGene:TraesCS1B01G183800 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C | InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 |
| PFAM:PF08839 | PFAM:PF16679 | SEG:seg | SMART:SM01075 | SUPFAM:SSF46785 | TIGR:cd08674 |
| MapMan:13.2.1.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:330504636..330509578
Molecular Weight (calculated)
62411.4 Da
IEP (calculated)
4.865
GRAVY (calculated)
-0.641
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEGKSVQVD LEKGLNQMPN DSNSTSPATM QKMKPDMDDS GRRTESPTPE KPESGREEIV VSSLATNLLS ERYKDRLAEK LLGNEDETDD EDDNDIALPD
101: GSQSPVSNEL LEKHKNLLTL FNRMESSIRL LRLRKKMTTF TNIATQVEVL TKRKFLYSHL AQMKHLFPEA IQINRILLHD QKSLCMYADM EITLLKDAVE
201: CSNPQESPAI AMCEAFRSKL LCFLGSHHKD IDVPEATLPE PFNLREELYL DALHNGHSAE GVLEFSSENG FSNASHFPQS FQKLMSQKSI TKVTEKTRLL
301: SDPVEVTSLG ADDTGGPDRS SNKHVSVPVN TNISDTPSRH SISFCENSTP KQVISNSPSM AETPAMQTPK RPLPTPVAKH ETSSRHGSEP RSTNSARRSL
401: IMFSPSKFDE SPSDRDPDTS KLDKDGVTSI TEPEVTTGKC LFPEETFTFT VENDNKTNQV SSMNSQEKLD SLRVTFDIVC GISGSTKNSL ITKQELFHNI
501: LANNLEIEET GEIEEQLHIL EDLSPDWISK ELRGGEILYS IKQIPDQKSV RERLTEVI
101: GSQSPVSNEL LEKHKNLLTL FNRMESSIRL LRLRKKMTTF TNIATQVEVL TKRKFLYSHL AQMKHLFPEA IQINRILLHD QKSLCMYADM EITLLKDAVE
201: CSNPQESPAI AMCEAFRSKL LCFLGSHHKD IDVPEATLPE PFNLREELYL DALHNGHSAE GVLEFSSENG FSNASHFPQS FQKLMSQKSI TKVTEKTRLL
301: SDPVEVTSLG ADDTGGPDRS SNKHVSVPVN TNISDTPSRH SISFCENSTP KQVISNSPSM AETPAMQTPK RPLPTPVAKH ETSSRHGSEP RSTNSARRSL
401: IMFSPSKFDE SPSDRDPDTS KLDKDGVTSI TEPEVTTGKC LFPEETFTFT VENDNKTNQV SSMNSQEKLD SLRVTFDIVC GISGSTKNSL ITKQELFHNI
501: LANNLEIEET GEIEEQLHIL EDLSPDWISK ELRGGEILYS IKQIPDQKSV RERLTEVI
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.