Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026393_P001 | Maize | cytosol | 79.67 | 73.0 |
| KRH30328 | Soybean | mitochondrion | 21.99 | 45.3 |
| Zm00001d032621_P001 | Maize | nucleus | 75.1 | 31.42 |
| EER91446 | Sorghum | nucleus | 68.05 | 29.23 |
| Zm00001d026469_P002 | Maize | nucleus | 63.49 | 27.22 |
| Zm00001d002056_P006 | Maize | extracellular | 63.9 | 26.51 |
| Os10t0489900-01 | Rice | nucleus | 54.77 | 23.04 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 52.7 | 22.76 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 51.87 | 22.4 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 52.7 | 22.4 |
| KRH52336 | Soybean | cytosol | 21.99 | 22.27 |
| HORVU1Hr1G044120.10 | Barley | plastid | 55.19 | 21.21 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 24.9 | 16.44 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 35.68 | 15.09 |
| KRH38848 | Soybean | nucleus | 30.71 | 13.73 |
| Solyc03g019960.2.1 | Tomato | nucleus | 26.56 | 13.59 |
| PGSC0003DMT400039343 | Potato | nucleus | 27.8 | 13.01 |
| KRH09362 | Soybean | mitochondrion | 25.31 | 12.5 |
| Zm00001d045354_P002 | Maize | nucleus | 23.65 | 9.95 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 4.15 | 7.09 |
Protein Annotations
| EnsemblPlants:Zm00001d046390_P001 | EnsemblPlants:Zm00001d046390_T001 | EnsemblPlantsGene:Zm00001d046390 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:CDT1_Gemini-bd-like | InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 | PFAM:PF08839 | ProteinID:AQL04213.1 | SMART:SM01075 |
| SUPFAM:SSF46785 | TMHMM:TMhelix | UniParc:UPI0008425080 | UniProt:A0A1D6P2H8 | MapMan:13.2.1.3 | : |
Description
CDT1-like protein a chloroplastic
Coordinates
chr9:+:86858170..86859530
Molecular Weight (calculated)
27103.0 Da
IEP (calculated)
7.580
GRAVY (calculated)
-0.045
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEGDATQLA LEKGSPQVSN DDGSSSLATV HKLKVDTEDA GSKIESPTPK KLESRSKWVV VSSLARNLLE ERHKDLLNLF NRMESSIRLL RLRKRMATFN
101: NIATQVEILA KRKLSYCHLA QMKYLFREAI PIKRVLLHDE KSLCMYADME IILVMDVVEY TSPDHSPSMA ICDAFYSKLL TFLDAHHKVP TKEQVDALSK
201: ELFALSTVTG ILSTLLATCV IVLTNKIYNL SEQIDAIVSL F
101: NIATQVEILA KRKLSYCHLA QMKYLFREAI PIKRVLLHDE KSLCMYADME IILVMDVVEY TSPDHSPSMA ICDAFYSKLL TFLDAHHKVP TKEQVDALSK
201: ELFALSTVTG ILSTLLATCV IVLTNKIYNL SEQIDAIVSL F
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.