Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89201 | Sorghum | nucleus | 83.42 | 83.13 |
| HORVU2Hr1G003370.11 | Barley | cytosol | 50.79 | 62.18 |
| TraesCS2D01G023000.1 | Wheat | cytosol, plastid | 56.37 | 59.81 |
| Os04t0185100-01 | Rice | cytosol, mitochondrion, plastid | 59.51 | 57.99 |
| TraesCS2A01G022200.1 | Wheat | plastid | 58.46 | 57.96 |
| TraesCS2B01G030600.1 | Wheat | plastid | 58.64 | 57.93 |
| TraesCS2D01G023500.1 | Wheat | endoplasmic reticulum | 42.58 | 55.84 |
| GSMUA_Achr10P... | Banana | nucleus | 42.76 | 44.95 |
| HORVU4Hr1G047140.6 | Barley | plastid | 16.06 | 42.2 |
| VIT_07s0005g03090.t01 | Wine grape | nucleus | 35.6 | 35.36 |
| GSMUA_Achr8P03390_001 | Banana | cytosol, nucleus, plastid | 23.56 | 35.06 |
| Solyc06g008510.2.1 | Tomato | nucleus, plastid | 34.55 | 33.96 |
| AT2G31270.1 | Thale cress | nucleus, plastid | 33.51 | 33.63 |
| PGSC0003DMT400028257 | Potato | nucleus, plastid | 34.03 | 33.45 |
| CDX84793 | Canola | nucleus, plastid | 31.41 | 32.67 |
| Bra022834.1-P | Field mustard | nucleus, plastid | 31.41 | 32.67 |
| CDY24744 | Canola | nucleus | 33.33 | 32.59 |
| Solyc01g006140.2.1 | Tomato | nucleus | 32.29 | 32.34 |
| CDY23948 | Canola | nucleus, plastid | 31.06 | 32.19 |
| KRH32170 | Soybean | plastid | 32.98 | 31.71 |
| Bra018272.1-P | Field mustard | nucleus | 32.46 | 31.69 |
| CDY10780 | Canola | nucleus | 32.29 | 31.52 |
| CDY15409 | Canola | nucleus, plastid | 26.7 | 30.85 |
| CDY67450 | Canola | cytosol | 14.31 | 30.6 |
| KRH19542 | Soybean | nucleus | 32.29 | 29.89 |
| CDX76137 | Canola | cytosol, plastid | 24.26 | 29.45 |
| Bra014797.1-P | Field mustard | cytosol, plastid | 23.56 | 29.35 |
| CDX76134 | Canola | cytosol, plastid | 23.73 | 29.12 |
| CDY13226 | Canola | cytosol, plastid | 24.08 | 28.93 |
| Bra014795.1-P | Field mustard | cytosol | 17.63 | 28.69 |
| AT3G54710.1 | Thale cress | cytosol, plastid | 24.08 | 28.4 |
| Zm00001d026393_P001 | Maize | cytosol | 11.87 | 25.86 |
| GSMUA_Achr9P25190_001 | Banana | endoplasmic reticulum, vacuole | 42.76 | 25.65 |
| Zm00001d046390_P001 | Maize | cytosol | 9.95 | 23.65 |
| Zm00001d032621_P001 | Maize | nucleus | 23.56 | 23.44 |
| Zm00001d026469_P002 | Maize | nucleus | 22.69 | 23.13 |
| Zm00001d002056_P006 | Maize | extracellular | 22.86 | 22.55 |
Protein Annotations
| EnsemblPlants:Zm00001d045354_P002 | EnsemblPlants:Zm00001d045354_T002 | EnsemblPlantsGene:Zm00001d045354 | EntrezGene:103638085 | Gene3D:1.10.10.1420 | InterPro:CDT1_Gemini-bd-like |
| InterPro:Cdt1_C | InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 | PANTHER:PTHR28637:SF5 | PFAM:PF08839 | PFAM:PF16679 |
| ProteinID:AQL02120.1 | SEG:seg | SMART:SM01075 | SUPFAM:SSF46785 | UniParc:UPI000220B180 | UniProt:K7W6L5 |
| MapMan:13.2.1.3 | : | : | : | : | : |
Description
CDT1-like protein a chloroplastic
Coordinates
chr9:+:19436350..19439284
Molecular Weight (calculated)
62645.5 Da
IEP (calculated)
9.645
GRAVY (calculated)
-0.508
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATPPSKKA KTTAAPPPRK LREAAALADE VRTPDKAAKK MTPAAAFEQI PTPEKPEEMP RARGRSVAFS VKEIRRAALG LRRPAAQAEA AVEDDLESVE
101: RELGVGAGAG RSPVKRKAEV KLPESYEMLF EFFNCLESST RLLRMKGSKA TFPNICSSIQ NLTERRFTHS HLAQLKYIMP EAIVINKILL RDDTTCCMYP
201: DLQVNLLVGA VENVLKQKGE TAYLALRRTF RQRLVEFYRE HPEGDDIPEH ELPHPFNRAR SSLPQDEQRT APESSSPLKP SDVNGQQQTA AVMSHMSQSF
301: KRRFSQRSPI GSATASAPSP LVKAASTAPS PLSRNSLFGC VDSGSTCGDE KSSSAKEDFC KSGVSENTPA KFASTPARLM APTPGLKTPK RPISATGYDT
401: PPLRTAKRSA RAKLFTTPTK NNSTGGESQS ASVSGASADD DLLSFLPQSL LQSVKEKEDR ALVEKESGFA DQVRRQKLIA SLPSTFDVVF LIYQSRQRSV
501: MTKQELVHKI IASSPKIADR SEVEGHLTLL KELVPDWFSE KTARSGDALC CVDATLSQSE IRQRLYAAAA AAE
101: RELGVGAGAG RSPVKRKAEV KLPESYEMLF EFFNCLESST RLLRMKGSKA TFPNICSSIQ NLTERRFTHS HLAQLKYIMP EAIVINKILL RDDTTCCMYP
201: DLQVNLLVGA VENVLKQKGE TAYLALRRTF RQRLVEFYRE HPEGDDIPEH ELPHPFNRAR SSLPQDEQRT APESSSPLKP SDVNGQQQTA AVMSHMSQSF
301: KRRFSQRSPI GSATASAPSP LVKAASTAPS PLSRNSLFGC VDSGSTCGDE KSSSAKEDFC KSGVSENTPA KFASTPARLM APTPGLKTPK RPISATGYDT
401: PPLRTAKRSA RAKLFTTPTK NNSTGGESQS ASVSGASADD DLLSFLPQSL LQSVKEKEDR ALVEKESGFA DQVRRQKLIA SLPSTFDVVF LIYQSRQRSV
501: MTKQELVHKI IASSPKIADR SEVEGHLTLL KELVPDWFSE KTARSGDALC CVDATLSQSE IRQRLYAAAA AAE
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.