Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11553 | Sorghum | nucleus | 83.13 | 85.94 |
| Zm00001d026469_P002 | Maize | nucleus | 82.1 | 84.88 |
| Zm00001d032621_P001 | Maize | nucleus | 69.71 | 70.31 |
| Zm00001d046390_P001 | Maize | cytosol | 26.51 | 63.9 |
| Zm00001d026393_P001 | Maize | cytosol | 28.23 | 62.36 |
| Os10t0489900-01 | Rice | nucleus | 57.31 | 58.12 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 54.04 | 56.27 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 53.7 | 55.91 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 54.22 | 55.56 |
| HORVU1Hr1G044120.10 | Barley | plastid | 53.36 | 49.44 |
| KRH30328 | Soybean | mitochondrion | 9.29 | 46.15 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 31.5 | 32.11 |
| KRH52336 | Soybean | cytosol | 12.05 | 29.41 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 17.21 | 27.4 |
| Solyc03g019960.2.1 | Tomato | nucleus | 21.17 | 26.11 |
| PGSC0003DMT400039343 | Potato | nucleus | 23.06 | 26.02 |
| KRH09362 | Soybean | mitochondrion | 21.51 | 25.61 |
| KRH38848 | Soybean | nucleus | 23.58 | 25.42 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 6.02 | 24.82 |
| Zm00001d045354_P002 | Maize | nucleus | 22.55 | 22.86 |
Protein Annotations
| EnsemblPlants:Zm00001d002056_P006 | EnsemblPlants:Zm00001d002056_T006 | EnsemblPlantsGene:Zm00001d002056 | EntrezGene:100280492 | InterPro:CDT1_Gemini-bd-like | InterPro:WH_DNA-bd_sf |
| ncoils:Coil | PANTHER:PTHR28637 | PFAM:PF08839 | ProteinID:ONM12906.1 | SEG:seg | SMART:SM01075 |
| SUPFAM:SSF46785 | UniParc:UPI00084341DD | UniProt:A0A1D6DW21 | MapMan:13.2.1.3 | : | : |
Description
CDT1-like protein a chloroplastic
Coordinates
chr2:-:5043274..5047667
Molecular Weight (calculated)
64927.8 Da
IEP (calculated)
4.907
GRAVY (calculated)
-0.464
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQWFVWSAV VLCRECLELK MSEANTTQLD LEKGFSQVSN DNDSSSPATM HKMKVETEDG GSEIESPTPE KRESRSKGVV VSSLARNLLA ERYRDRFSNQ
101: LVEDEGQTDD EDYNGSVSPS SSQSLFSESI ELLDKHKDLL SLFNRMESSI RLLHLRKKMA TFNNIATQVE ILTKRKLLYS HLAQMKHLFP EAIQIKRILV
201: HDEKSLCMYA DMEITLLMDV VECTSPDQSP SMTICEAFYS KLLSFLDAHH KGADIPEAIL PELFNSKPRE KLYLEAVHNG YAAESPLQGA TEERFLNASH
301: FPQSFRKLMS QKIIADGIQK TQLLSDPADL SSVIAYGTKG SNGNPKKEDE HAPVPGKYEI SATPSRHLIS CCQEGTPKQG TSESPLFSGT PVMQTPKRQL
401: PTSLDKPKAT CGHISEPCSA SSARRSLNTL LKFEVGSPYY DGVEHTDTTK KGMISEDSSN FNKSFEEDSP VLFIDKDKID EVDSVDSQEK IASLHTTFDI
501: VCDISHPTKN SLITKQELFH NILANNLEIE EIGEIEEQLN ILEDLAPDLI SKKMINGGEI LYSIQPISDQ NSVRVRLVEP V
101: LVEDEGQTDD EDYNGSVSPS SSQSLFSESI ELLDKHKDLL SLFNRMESSI RLLHLRKKMA TFNNIATQVE ILTKRKLLYS HLAQMKHLFP EAIQIKRILV
201: HDEKSLCMYA DMEITLLMDV VECTSPDQSP SMTICEAFYS KLLSFLDAHH KGADIPEAIL PELFNSKPRE KLYLEAVHNG YAAESPLQGA TEERFLNASH
301: FPQSFRKLMS QKIIADGIQK TQLLSDPADL SSVIAYGTKG SNGNPKKEDE HAPVPGKYEI SATPSRHLIS CCQEGTPKQG TSESPLFSGT PVMQTPKRQL
401: PTSLDKPKAT CGHISEPCSA SSARRSLNTL LKFEVGSPYY DGVEHTDTTK KGMISEDSSN FNKSFEEDSP VLFIDKDKID EVDSVDSQEK IASLHTTFDI
501: VCDISHPTKN SLITKQELFH NILANNLEIE EIGEIEEQLN ILEDLAPDLI SKKMINGGEI LYSIQPISDQ NSVRVRLVEP V
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.