Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11553 | Sorghum | nucleus | 60.73 | 61.92 |
| EER91446 | Sorghum | nucleus | 59.51 | 60.78 |
| Zm00001d026469_P002 | Maize | nucleus | 58.99 | 60.14 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 57.77 | 59.32 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 58.46 | 59.08 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 57.24 | 58.78 |
| Zm00001d002056_P006 | Maize | extracellular | 58.12 | 57.31 |
| Zm00001d032621_P001 | Maize | nucleus | 56.54 | 56.25 |
| Zm00001d046390_P001 | Maize | cytosol | 23.04 | 54.77 |
| HORVU1Hr1G044120.10 | Barley | plastid | 58.12 | 53.11 |
| Zm00001d026393_P001 | Maize | cytosol | 24.08 | 52.47 |
| KRH30328 | Soybean | mitochondrion | 8.73 | 42.73 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 33.33 | 33.51 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 6.98 | 28.37 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 17.98 | 28.22 |
| PGSC0003DMT400039343 | Potato | nucleus | 23.91 | 26.6 |
| KRH52336 | Soybean | cytosol | 10.99 | 26.47 |
| KRH38848 | Soybean | nucleus | 24.26 | 25.79 |
| KRH09362 | Soybean | mitochondrion | 21.82 | 25.61 |
| Solyc03g019960.2.1 | Tomato | nucleus | 20.42 | 24.84 |
| Os04t0185100-01 | Rice | cytosol, mitochondrion, plastid | 23.91 | 23.3 |
Protein Annotations
| Gene3D:1.10.10.1420 | MapMan:13.2.1.3 | EntrezGene:4348970 | ProteinID:AAR87370.1 | ProteinID:ABB47814.1 | EMBL:AK241768 |
| ProteinID:BAT11419.1 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C | ProteinID:EAZ16509.1 | GO:GO:0000076 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006260 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0051276 | EnsemblPlantsGene:Os10g0489900 | EnsemblPlants:Os10t0489900-01 | PFAM:PF08839 | PFAM:PF16679 |
| PANTHER:PTHR28637 | UniProt:Q75G59 | SMART:SM01075 | SUPFAM:SSF46785 | UniParc:UPI000022DFE7 | InterPro:WH_DNA-bd_sf |
| RefSeq:XP_015614535.1 | SEG:seg | : | : | : | : |
Description
Similar to CDT1a protein. (Os10t0489900-01)
Coordinates
chr10:+:18591175..18595632
Molecular Weight (calculated)
63875.4 Da
IEP (calculated)
4.917
GRAVY (calculated)
-0.560
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEGKNTQLD LETEGSSSPA ATQKMKVKME DSESKIESPT LEKSESRRNG VVISSLARNL LAERYKDRFA AQLLGDEDED ETDDEDDSSS TSPDGSSPSV
101: SESIDISGTS PKDRSNDLLE KHNNLLNLFN RMMSSIRLLH LRKKMTTFKN IATQVEILTK REFLYTHLAQ MKHLFPEAIQ IKKILLHDEK SLCMYADMEI
201: TILMDTVESS SPDQSLSMAI CEAFHSKLLS FLDAHHKDID IPEAMLPEPF NSRDKLHLKA PLDGHSAEPL LQSSNRNELL NASHFPCSFQ KLMSQKIIAD
301: GTDRTKLLSD PAELSMLSAD DTEGPKRSSN KQDQHASIPF KTDISSTPNR HLISSCQGST PKQGTLLHSP LMAETPAMQT PRRPLPTQIE KLETTSGQTS
401: EARSASSARR SLKMFSPSKI QECSSDHDGA ILTLEHEVTA GKCLFPDETH NFTNSLEENN PAICFADVDK TKEVDPAESQ EKIASLQLTF DIVCDISRST
501: KNSLITKQEL FHNILANNLE IEETGEIEEQ LHILEDLSPD WISKKVIPGG DILYSIKEIA DQKSVRARLV EVI
101: SESIDISGTS PKDRSNDLLE KHNNLLNLFN RMMSSIRLLH LRKKMTTFKN IATQVEILTK REFLYTHLAQ MKHLFPEAIQ IKKILLHDEK SLCMYADMEI
201: TILMDTVESS SPDQSLSMAI CEAFHSKLLS FLDAHHKDID IPEAMLPEPF NSRDKLHLKA PLDGHSAEPL LQSSNRNELL NASHFPCSFQ KLMSQKIIAD
301: GTDRTKLLSD PAELSMLSAD DTEGPKRSSN KQDQHASIPF KTDISSTPNR HLISSCQGST PKQGTLLHSP LMAETPAMQT PRRPLPTQIE KLETTSGQTS
401: EARSASSARR SLKMFSPSKI QECSSDHDGA ILTLEHEVTA GKCLFPDETH NFTNSLEENN PAICFADVDK TKEVDPAESQ EKIASLQLTF DIVCDISRST
501: KNSLITKQEL FHNILANNLE IEETGEIEEQ LHILEDLSPD WISKKVIPGG DILYSIKEIA DQKSVRARLV EVI
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.