Factsheet for HORVU4Hr1G047140.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G036500.57
HORVU1Hr1G062160.1
HORVU2Hr1G003370.11
HORVU3Hr1G021820.1
HORVU3Hr1G021900.1
HORVU4Hr1G001140.1
HORVU4Hr1G047140.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	HORVU1Hr1G036500.57	AT1G08260.1	22773747
AT2G31270.1	HORVU2Hr1G003370.11	AT2G31270.1	22773747
AT2G31270.1	HORVU4Hr1G047140.6	AT2G31270.1	22773747
AT2G31270.1	HORVU1Hr1G062160.1	AT5G13060.1	18818695
AT2G31270.1	HORVU3Hr1G021820.1	AT5G22110.1	22773747
AT2G31270.1	HORVU3Hr1G021900.1	AT5G22110.1	22773747
AT3G54710.1	HORVU1Hr1G036500.57	AT1G08260.1	22773747
AT3G54710.1	HORVU4Hr1G001140.1	AT2G27470.1	22773747
AT3G54710.1	HORVU2Hr1G003370.11	AT3G54710.1	22773747
AT3G54710.1	HORVU4Hr1G047140.6	AT3G54710.1	22773747
AT3G54710.1	HORVU1Hr1G062160.1	AT5G13060.1	18818695
AT3G54710.1	HORVU3Hr1G021820.1	AT5G22110.1	22773747
AT3G54710.1	HORVU3Hr1G021900.1	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G003370.11	Barley	cytosol	46.79	21.79
TraesCS2D01G023000.1	Wheat	cytosol, plastid	47.25	19.07
TraesCS2A01G022200.1	Wheat	plastid	49.54	18.69
TraesCS2B01G030600.1	Wheat	plastid	48.17	18.1
Zm00001d045354_P002	Maize	nucleus	42.2	16.06
EER89201	Sorghum	nucleus	42.2	16.0
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	30.73	15.33
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	41.28	15.31
GSMUA_Achr10P...	Banana	nucleus	32.57	13.03
AT2G31270.1	Thale cress	nucleus, plastid	30.28	11.56
CDX76134	Canola	cytosol, plastid	24.31	11.35
Bra014797.1-P	Field mustard	cytosol, plastid	23.85	11.3
CDX84793	Canola	nucleus, plastid	27.98	11.07
CDX76137	Canola	cytosol, plastid	23.85	11.02
CDY13226	Canola	cytosol, plastid	23.85	10.9
Bra022834.1-P	Field mustard	nucleus, plastid	27.52	10.89
AT3G54710.1	Thale cress	cytosol, plastid	23.85	10.7
Solyc01g006140.2.1	Tomato	nucleus	27.06	10.31
CDY23948	Canola	nucleus, plastid	26.15	10.31
CDY24744	Canola	nucleus	27.52	10.24
VIT_07s0005g03090.t01	Wine grape	nucleus	26.61	10.05
Bra018272.1-P	Field mustard	nucleus	26.61	9.88
CDY10780	Canola	nucleus	26.61	9.88
CDY15409	Canola	nucleus, plastid	21.1	9.27
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	16.05	9.09
PGSC0003DMT400028257	Potato	nucleus, plastid	24.31	9.09
KRH32170	Soybean	plastid	24.77	9.06
Solyc06g008510.2.1	Tomato	nucleus, plastid	23.85	8.92
KRH19542	Soybean	nucleus	25.23	8.89
CDY67450	Canola	cytosol	10.55	8.58
HORVU1Hr1G044120.10	Barley	plastid	23.39	8.13
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	32.11	7.33
Bra014795.1-P	Field mustard	cytosol	10.55	6.53

Protein Annotations

EnsemblPlants:HORVU4Hr1G047140.6	EnsemblPlantsGene:HORVU4Hr1G047140	InterPro:CDT1_Gemini-bd-like	InterPro:WH_DNA-bd_sf	PANTHER:PTHR28637	PANTHER:PTHR28637:SF5
PFAM:PF08839	SEG:seg	SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI000B462334	UniProt:A0A287NY49
MapMan:13.2.1.3	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:378123984..378125484

Molecular Weight (calculated)

24463.7 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.133

Length

218 amino acids

Sequence
(BLAST)

001: LPSLCSSDPL SSCPLSYRGS EIEWSLSGSP TSMSTPSGKT TLIVAITNVR SGLLRYTCSV LSKAGSAKVV EFDEIDKAPE EKVVKEVRRA ALELQRAGRA
101: PYEIVCELFN CFESSTGLLR MKRSKATFPI ICSSIQNLAE RRFTYGHIAQ LKYIMPETIV INKILLRDDK TCCMKPDLQV NLLVDSVEDS AMQKGENCYF
201: AMRRMFRQRL VDFLHETS

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.