CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69674
CDX71450
CDX76134
CDX76137
CDX83257
CDX85673
CDX91149
CDX93579
CDX95079
CDX97221
CDY04497
CDY13226
CDY31165
CDY31178
CDY67450

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54710.1	CDX93579	AT1G08260.1	22773747
AT3G54710.1	CDX95079	AT1G08260.1	22773747
AT3G54710.1	CDX71450	AT2G27470.1	22773747
AT3G54710.1	CDY04497	AT2G27470.1	22773747
AT3G54710.1	CDY31178	AT2G27470.1	22773747
AT3G54710.1	CDX76134	AT3G54710.1	22773747
AT3G54710.1	CDX76137	AT3G54710.1	22773747
AT3G54710.1	CDY13226	AT3G54710.1	22773747
AT3G54710.1	CDY67450	AT3G54710.1	22773747
AT3G54710.1	CDX69674	AT5G13060.1	18818695
AT3G54710.1	CDX85673	AT5G13060.1	18818695
AT3G54710.1	CDX91149	AT5G13060.1	18818695
AT3G54710.1	CDX97221	AT5G13060.1	18818695
AT3G54710.1	CDX83257	AT5G22110.1	22773747
AT3G54710.1	CDY31165	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014797.1-P	Field mustard	cytosol, plastid	91.31	93.7
CDY67450	Canola	cytosol	51.06	89.93
CDY13226	Canola	cytosol, plastid	90.47	89.52
CDX76134	Canola	cytosol, plastid	87.71	88.65
AT3G54710.1	Thale cress	cytosol, plastid	58.47	56.79
CDX84793	Canola	nucleus, plastid	37.92	32.49
CDY23948	Canola	nucleus, plastid	37.08	31.65
CDY10780	Canola	nucleus	38.98	31.35
CDY24744	Canola	nucleus	38.77	31.23
VIT_07s0005g03090.t01	Wine grape	nucleus	37.08	30.33
CDY15409	Canola	nucleus, plastid	31.36	29.84
Solyc06g008510.2.1	Tomato	nucleus, plastid	35.17	28.47
PGSC0003DMT400028257	Potato	nucleus, plastid	34.32	27.79
KRH32170	Soybean	plastid	34.96	27.68
HORVU2Hr1G003370.11	Barley	cytosol	27.12	27.35
GSMUA_Achr10P...	Banana	nucleus	30.93	26.79
TraesCS2D01G023000.1	Wheat	cytosol, plastid	30.3	26.48
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	24.15	26.09
KRH19542	Soybean	nucleus	34.11	26.01
Solyc01g006140.2.1	Tomato	nucleus	30.08	24.83
EER89201	Sorghum	nucleus	30.08	24.7
TraesCS2A01G022200.1	Wheat	plastid	30.08	24.57
TraesCS2B01G030600.1	Wheat	plastid	29.87	24.31
Zm00001d045354_P002	Maize	nucleus	29.45	24.26
HORVU4Hr1G047140.6	Barley	plastid	11.02	23.85
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	29.24	23.47
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	18.43	22.6
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	31.57	15.6

Protein Annotations

EnsemblPlants:CDX76137	EnsemblPlantsGene:GSBRNA2T00126426001	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf
PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF08839	PFAM:PF16679	ProteinID:CDX76137	ProteinID:CDX76137.1
SEG:seg	SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI0004EE5F0D	MapMan:13.2.1.3	:

Description

BnaA04g04010D

Coordinates

chrLK031806:-:1251178..1253747

Molecular Weight (calculated)

53253.8 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.592

Length

472 amino acids

Sequence
(BLAST)

001: MSSIETASKK PSMASESWNP ETLFSTKTPD KTATLSTRPR DSDKPVKRQI LTSPRKPETT VKLPERFEIL DEFFNGLVTA TRLLKLKGSL TSFANICPKI
101: EYLTNRIYSY DHLAQMKHIY PEAIEVKRVL KCDKVTSCMK PTLHINLNTD AIELEDTSCG TKYMQLRKVF YSKLVEFYKA HPKDEIPKEL LPEPFNFSKK
201: DSDTISVVDV GAFKVENDGF DVQMDEMEQE EDKVNKVFPD STLSDGTEEC LLPNTESTPA KVLSTPSKDL STPIKLMSAT PTLQASRRCI TMTPDDDSDS
301: VRPTNDLERR PSRTRCLNFD TLEEEDGTVS DESNDEANDD EASDASSDED SDASYDEISL LHSMIEEPKA ETVKQNLPKL VNVIHKLFHS TKRTVITKEE
401: LLHKMIACQI DIMDRKEVEE QLRLMLQLVP DWISETKASF GDVLVSINKL STPETVGARL EEAISQDSSN VS

Best Arabidopsis Sequence Match ( AT3G54710.1 )
(BLAST)

001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY

Arabidopsis Description

CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.