Factsheet for Os07t0628600-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0184700-01
Os07t0628600-00
Os10t0402200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	Os07t0628600-00	AT1G26840.1	16179646
AT1G26840.1	Os03t0184700-01	AT2G37560.1	16179646
AT1G26840.1	Os10t0402200-01	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99752	Sorghum	nucleus, plastid	91.19	91.81
TraesCS2D01G163800.1	Wheat	nucleus, plastid	89.15	89.46
TraesCS2B01G183200.1	Wheat	nucleus, plastid	89.15	89.46
Zm00001d022226_P002	Maize	nucleus, plastid	88.81	89.42
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	86.44	87.93
TraesCS2A01G157700.1	Wheat	nucleus, plastid	88.14	87.54
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	72.2	85.2
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	68.81	78.08
TraesCS5B01G221800.3	Wheat	nucleus	81.36	71.64
GSMUA_Achr11P...	Banana	nucleus	67.46	69.1
VIT_01s0026g02290.t01	Wine grape	nucleus	66.44	68.06
KRH70714	Soybean	nucleus	64.41	66.43
KRH74848	Soybean	nucleus	62.37	64.34
PGSC0003DMT400008733	Potato	nucleus	61.69	64.08
Solyc05g007450.2.1	Tomato	nucleus	61.69	64.08
CDY50731	Canola	nucleus	61.69	64.08
CDY46436	Canola	cytosol, nucleus, plastid	61.36	63.73
CDY45005	Canola	nucleus	61.36	63.73
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	61.36	63.73
Bra024679.1-P	Field mustard	nucleus	59.66	63.54
CDY16197	Canola	nucleus	61.02	63.38
AT1G26840.1	Thale cress	nucleus	60.0	62.32
CDY31509	Canola	extracellular	24.07	54.2

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	EntrezGene:4343985	ProteinID:BAC20670.1	ProteinID:BAC22351.1	ProteinID:BAF22265.1
ProteinID:BAT02758.1	ProteinID:EAZ40750.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006270	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009987	InterPro:ORC6	InterPro:ORC6_met/pln
EnsemblPlantsGene:Os07g0628600	EnsemblPlants:Os07t0628600-00	PFAM:PD315657	PFAM:PF05460	PANTHER:PTHR13394	UniProt:Q8GSL4
UniParc:UPI000005E6B4	RefSeq:XP_015645695.1	SEG:seg	:	:	:

Description

ORIGIN RECOGNITION COMPLEX 6Origin recognition complex subunit 6 family protein. (Os07t0628600-00)

Coordinates

chr7:-:26044575..26047500

Molecular Weight (calculated)

32607.3 Da

IEP (calculated)

9.786

GRAVY (calculated)

-0.362

Length

295 amino acids

Sequence
(BLAST)

001: MDMSSIASRL GLSGSRPVVR KAAELRRLCD VTFDSSVLGI GEVCKAIICL EIAASKFQVI FDRAEAVRMS GMSEKAYIRS FNALQNGLGV KTTLDVRELG
101: IQFGCVRLIP FVQKGLSLYK ERFLAALPPS RRASTDFGRP VFTAAAFYLC AKRHKLKVDK LKLIDLCGTS SSEFTTVSTS MADLCFDVFG IAKEKKDAKS
201: IKGSRELLDV LPSKRKHDDD SDSSGESSGD DQDELDLPTY KRHKKMEKEA YNDWKSSVLS NKQTKPDPAK PRKQAQLNFK KKPSDMALEV SSAAN

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.