Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- extracellular 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0281200-01 | |
| Os02t0627800-00 | |
| Os03t0184700-01 | |
| Os05t0493500-00 | |
| Os07t0628600-00 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G120800.1 | Wheat | plastid | 78.55 | 78.33 |
| TraesCS7A01G213600.1 | Wheat | plastid | 78.13 | 78.03 |
| HORVU2Hr1G029330.11 | Barley | plastid | 77.99 | 77.78 |
| TraesCS7D01G215600.1 | Wheat | plastid | 77.86 | 77.64 |
| EES17403 | Sorghum | plastid | 71.87 | 72.07 |
| Zm00001d031073_P001 | Maize | plastid | 27.99 | 65.9 |
| GSMUA_Achr2P17940_001 | Banana | nucleus | 47.49 | 53.7 |
| VIT_16s0039g01430.t01 | Wine grape | nucleus | 23.96 | 46.36 |
| Bra008604.1-P | Field mustard | nucleus | 40.81 | 43.41 |
| KRH23980 | Soybean | plastid | 44.15 | 43.07 |
| VIT_16s0039g01440.t01 | Wine grape | cytosol | 14.62 | 43.03 |
| Solyc12g013880.1.1 | Tomato | nucleus | 39.0 | 42.3 |
| AT5G16690.1 | Thale cress | nucleus | 43.18 | 42.23 |
| PGSC0003DMT400039753 | Potato | cytosol | 21.17 | 42.11 |
| CDX69432 | Canola | nucleus | 42.76 | 42.05 |
| PGSC0003DMT400039751 | Potato | nucleus | 19.22 | 41.95 |
| CDY49642 | Canola | nucleus | 42.76 | 39.21 |
Protein Annotations
| MapMan:13.2.1.1.3 | Gene3D:3.40.50.300 | EntrezGene:4348571 | ProteinID:AAM74272.1 | EMBL:AB100408 | ProteinID:ABB47555.2 |
| ProteinID:BAF26464.1 | ProteinID:BAT10748.1 | ProteinID:EEE50922.1 | GO:GO:0000784 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003688 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005656 | GO:GO:0005664 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006260 | GO:GO:0006267 | GO:GO:0006270 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009744 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0031261 | GO:GO:0048527 | InterPro:ORC3 | EnsemblPlantsGene:Os10g0402200 | EnsemblPlants:Os10t0402200-01 | PFAM:PF07034 |
| PANTHER:PTHR12748 | UniProt:Q0IY07 | UniParc:UPI00005E1E4D | RefSeq:XP_015613475.1 | SEG:seg | : |
Description
ORIGIN RECOGNITION COMPLEX 3Origin recognition complex subunit 3, Lateral root development (Os10t0402200-01)
Coordinates
chr10:-:13600900..13606431
Molecular Weight (calculated)
80127.6 Da
IEP (calculated)
7.306
GRAVY (calculated)
-0.147
Length
718 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPPGEAPL TAATNIEPFY VLHKGGAAAS SSSSSAPSLP SSGRARRRID VSGLASPNPK PGKRSRDDDA AEDDDDDELY ERLRLDAFHR VWSKIQSTIN
101: EVLRGISLKL FDQVLRWVQE SFSAVRSIAR PSAAEVRQPY PLLTDVICRK IPTAFVLTKN AEFVDDITTF RDLAEYLESN GCHLAKLSAT ELSEKNGVGC
201: CFRSLLRQLL SDVPDVADIF ALASWYSAAE NYDQPIVVVI DDLEQCSGDV LGELVMMLSE WVIKIPIFFV MGIATTLDAP RKLLSSEDLQ RLEPCKLTLG
301: SPSDRMNALV EAILVKPCAG FCISHEVAVF LRNYFFKHDG TITSFISALK LACSKHFSVE PLSFLCMGML EEDRENFWHD KFNALPQELR KYASGLPSCT
401: REKDSTKSGD NMVDGLSELM NIQKDWSSVL LCLYEAGKHG KVQLLDIFCE AVNPDLHTQK APNLPNEKSG TSRRFIDQVM DTIRYLPVET LFCLLEVWSI
501: HLNGMDKITN KVKELQSTTI STDSVRITKD KWPRRSTNST GNSTVALNDK VAMLLDDVTR KFLVSVECLP FHEIVCFKNV SILQSALIGN PRRMVQLDLV
601: KSHKHLKCSC CRKNGIAVLA SMHDTSIMCN LAQEYGDVIN LHDWYISFDG IINSVHSKIK RKPHTSPSKK KSKPVAAESE AMIQARFCRA VTELQITGLL
701: RMPSKRRPDL VQRIAFGL
101: EVLRGISLKL FDQVLRWVQE SFSAVRSIAR PSAAEVRQPY PLLTDVICRK IPTAFVLTKN AEFVDDITTF RDLAEYLESN GCHLAKLSAT ELSEKNGVGC
201: CFRSLLRQLL SDVPDVADIF ALASWYSAAE NYDQPIVVVI DDLEQCSGDV LGELVMMLSE WVIKIPIFFV MGIATTLDAP RKLLSSEDLQ RLEPCKLTLG
301: SPSDRMNALV EAILVKPCAG FCISHEVAVF LRNYFFKHDG TITSFISALK LACSKHFSVE PLSFLCMGML EEDRENFWHD KFNALPQELR KYASGLPSCT
401: REKDSTKSGD NMVDGLSELM NIQKDWSSVL LCLYEAGKHG KVQLLDIFCE AVNPDLHTQK APNLPNEKSG TSRRFIDQVM DTIRYLPVET LFCLLEVWSI
501: HLNGMDKITN KVKELQSTTI STDSVRITKD KWPRRSTNST GNSTVALNDK VAMLLDDVTR KFLVSVECLP FHEIVCFKNV SILQSALIGN PRRMVQLDLV
601: KSHKHLKCSC CRKNGIAVLA SMHDTSIMCN LAQEYGDVIN LHDWYISFDG IINSVHSKIK RKPHTSPSKK KSKPVAAESE AMIQARFCRA VTELQITGLL
701: RMPSKRRPDL VQRIAFGL
001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS
Arabidopsis Description
ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.