Factsheet for Solyc06g073510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g006420.2.1
Solyc05g007450.2.1
Solyc06g073510.2.1
Solyc12g013880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	Solyc05g007450.2.1	AT1G26840.1	16179646
AT2G37560.1	Solyc06g073510.2.1	AT2G37560.1	16179646
AT2G37560.1	Solyc03g006420.2.1	AT4G12620.1	16179646
AT2G37560.1	Solyc12g013880.1.1	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069464	Potato	nucleus	98.35	98.35
KRH05698	Soybean	endoplasmic reticulum, extracellular	57.3	71.23
VIT_18s0001g10740.t01	Wine grape	nucleus	60.61	69.84
KRH15345	Soybean	nucleus	68.59	68.03
Bra005184.1-P	Field mustard	nucleus	67.77	67.77
CDX74950	Canola	nucleus	67.77	67.77
CDY70246	Canola	nucleus	66.67	66.67
AT2G37560.1	Thale cress	nucleus	66.39	66.39
GSMUA_Achr10P...	Banana	nucleus	53.17	62.87
TraesCS4B01G301600.1	Wheat	nucleus	63.36	60.53
TraesCS4A01G003800.1	Wheat	nucleus	63.36	60.37
TraesCS4D01G299900.1	Wheat	nucleus	63.36	60.37
EER93232	Sorghum	nucleus	62.26	59.95
EER92739	Sorghum	nucleus	61.71	59.57
Os03t0184700-01	Rice	nucleus	61.43	58.84
Zm00001d017423_P001	Maize	nucleus	60.61	58.36

Protein Annotations

MapMan:13.2.1.1.2	GO:GO:0000808	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:K4C970	InterPro:ORC2	PFAM:PF04084	PANTHER:PTHR14052	EnsemblPlantsGene:Solyc06g073510.2
EnsemblPlants:Solyc06g073510.2.1	UniParc:UPI0002765DCC	SEG:seg	:	:	:

Description

Origin of replication complex subunit 2 [Source:Projected from Arabidopsis thaliana (AT2G37560) UniProtKB/Swiss-Prot;Acc:Q38899]

Coordinates

chr6:+:45309663..45313239

Molecular Weight (calculated)

41029.0 Da

IEP (calculated)

5.145

GRAVY (calculated)

-0.143

Length

363 amino acids

Sequence
(BLAST)

001: MDVDEIEEEE FGFSRNYFLA KELGSSSRKK SARKLSEIDL VDEEELREVA ASIEPKHEKE VNELISSYQS LYSKWLFVLR SGFALLMYGF GSKKALIEDF
101: ASKSLTEYSV IVVNGYLQSI NLKQVVITLA ELLWDQVKLR QKTTSGSLCK SQQPFNTRSM SDLLTFLDSP DLEVEDCFVC ILVHNIDGPG LRDSDSQQCV
201: ASIAACSHVR MVASIDHVNA PLLWDKKMVH TQFDWYWCHV PTFAPYKVES MFFPFILAHG GSAQSVKTAS IVLQSLTPNA QNVFKVLAEH QLAHPDEEGM
301: PINNLYSTCR ERFLVSSQVT LNSHLTEFKD HELIKTKRNS DGQDCLCIPL TNEALQKLIA DIV

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.