Factsheet for GSMUA_Achr10P19330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P17940_001
GSMUA_Achr8P31340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	GSMUA_Achr11P...	AT1G26840.1	16179646
AT2G37560.1	GSMUA_Achr10P...	AT2G37560.1	16179646
AT2G37560.1	GSMUA_Achr8P31340_001	AT4G12620.1	16179646
AT2G37560.1	GSMUA_Achr2P17940_001	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10740.t01	Wine grape	nucleus	65.8	64.13
CDX74950	Canola	nucleus	65.15	55.1
Bra005184.1-P	Field mustard	nucleus	64.82	54.82
AT2G37560.1	Thale cress	nucleus	64.5	54.55
CDY70246	Canola	nucleus	64.17	54.27
PGSC0003DMT400069464	Potato	nucleus	63.19	53.44
EER93232	Sorghum	nucleus	65.47	53.32
Zm00001d017423_P001	Maize	nucleus	65.47	53.32
Solyc06g073510.2.1	Tomato	nucleus	62.87	53.17
EER92739	Sorghum	nucleus	64.82	52.93
KRH15345	Soybean	nucleus	62.87	52.73
Os03t0184700-01	Rice	nucleus	64.82	52.51
TraesCS4A01G003800.1	Wheat	nucleus	64.82	52.23
TraesCS4D01G299900.1	Wheat	nucleus	64.5	51.97
TraesCS4B01G301600.1	Wheat	nucleus	64.17	51.84
KRH05698	Soybean	endoplasmic reticulum, extracellular	47.88	50.34

Protein Annotations

MapMan:13.2.1.1.2	GO:GO:0000808	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G19330_001	EnsemblPlants:GSMUA_Achr10P19330_001	EnsemblPlants:GSMUA_Achr10T19330_001	UniProt:M0RJK8	InterPro:ORC2
PFAM:PF04084	PANTHER:PTHR14052	UniParc:UPI000295D65F	:	:	:

Description

Origin recognition complex subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G19330_001]

Coordinates

chr10:+:25754280..25757088

Molecular Weight (calculated)

34812.8 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.212

Length

307 amino acids

Sequence
(BLAST)

001: MDLRVGEEVP MEEDDEFTLS RNYFLAKEGS TSRKKSARKL SDIDLVDEQV LRMAVSAIKP KHEKEIESLL KSYKDLYSKW LFELRCGFGL LMYGFGSKKI
101: LLEDFASTTL TDYGVVVING YLPSVNIKQV VITLAEVLSD QLKHKRKNST GSKSRTQQPF SSQSIEDLLS FLNLQLPDDN DCFICVVIHN IDGPSLRDSE
201: SQQYLARIAS CSLVRMVASV DHVNAPLLWD KKMVHTQFNW CWYHVPTFAP YKFEGSFFPL VLANCGNSQT TKTALVVLQS LTPNAQSVFK ILAEYQLANE
301: KEGKHAY

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.