Factsheet for Bra005184.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005184.1-P
Bra008604.1-P
Bra016292.1-P
Bra024679.1-P
Bra029471.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37560.1	Bra016292.1-P	AT1G26840.1	16179646
AT2G37560.1	Bra024679.1-P	AT1G26840.1	16179646
AT2G37560.1	Bra005184.1-P	AT2G37560.1	16179646
AT2G37560.1	Bra029471.1-P	AT4G12620.1	16179646
AT2G37560.1	Bra008604.1-P	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74950	Canola	nucleus	97.8	97.8
AT2G37560.1	Thale cress	nucleus	88.43	88.43
PGSC0003DMT400069464	Potato	nucleus	67.77	67.77
Solyc06g073510.2.1	Tomato	nucleus	67.77	67.77
VIT_18s0001g10740.t01	Wine grape	nucleus	58.4	67.3
KRH05698	Soybean	endoplasmic reticulum, extracellular	53.17	66.1
GSMUA_Achr10P...	Banana	nucleus	54.82	64.82
KRH15345	Soybean	nucleus	64.74	64.21
EER93232	Sorghum	nucleus	62.53	60.21
EER92739	Sorghum	nucleus	62.26	60.11
Zm00001d017423_P001	Maize	nucleus	62.26	59.95
TraesCS4A01G003800.1	Wheat	nucleus	62.26	59.32
TraesCS4D01G299900.1	Wheat	nucleus	62.26	59.32
TraesCS4B01G301600.1	Wheat	nucleus	61.98	59.21
Os03t0184700-01	Rice	nucleus	61.16	58.58

Protein Annotations

EnsemblPlants:Bra005184.1	EnsemblPlants:Bra005184.1-P	EnsemblPlantsGene:Bra005184	GO:GO:0000808	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:ORC2	PANTHER:PTHR14052	PFAM:PF04084
UniParc:UPI00025478CF	UniProt:M4CLU7	MapMan:13.2.1.1.2	:	:	:

Description

AT2G37560 (E=7e-189) ORC2, ATORC2 | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2); DNA replication origin binding / protein binding

Coordinates

chrA05:-:3881316..3882864

Molecular Weight (calculated)

40873.5 Da

IEP (calculated)

5.053

GRAVY (calculated)

-0.271

Length

363 amino acids

Sequence
(BLAST)

001: MEDIDNIEED EFGFSRNYFL AKELGGSSKR SARKLSDISL VDEQELRETA FNIETKHEKE IDELLNEYKT MYPKWVFELR CGFGLLMYGF GSKKGLLEDF
101: ASSSLTEYSV VVINGYLPSV NLKQVLLAIA ELLSEQLKSR RKSSGSLAKG QEAFPSRSVD DILSFINGSQ SEDKDCFICV VVHNIDGPAL RDPESQQTLA
201: QLAACSHIRI IASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYKVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNAQ NVFKILADYQ LSHPDEDGMP
301: TEDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLS SDALRQLLLD LSQ

Best Arabidopsis Sequence Match ( AT2G37560.1 )
(BLAST)

001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ

Arabidopsis Description

ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.