Factsheet for PGSC0003DMT400055214

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092090.1.1	Tomato	nucleus	89.59	92.52
VIT_00s0541g00020.t01	Wine grape	nucleus	39.82	45.36
KRH28324	Soybean	nucleus	34.39	44.71
PGSC0003DMT400013972	Potato	nucleus	41.18	44.61
KRH77163	Soybean	nucleus	34.39	44.19
PGSC0003DMT400012575	Potato	nucleus	25.79	40.71
KRH04390	Soybean	nucleus	30.77	40.48
CDY70316	Canola	nucleus	24.43	39.71
KRH58155	Soybean	nucleus	32.13	39.44
Bra031845.1-P	Field mustard	nucleus	23.98	38.97
AT3G49760.1	Thale cress	nucleus	27.15	38.46
CDX69321	Canola	nucleus	38.01	34.01
CDY51983	Canola	nucleus	25.79	33.93
CDX75671	Canola	nucleus	37.56	33.74
Bra011780.1-P	Field mustard	nucleus	37.56	33.74
CDX72653	Canola	nucleus	38.01	33.07
CDY05960	Canola	nucleus	27.15	32.26
CDY29581	Canola	nucleus	36.2	32.13
Bra017850.1-P	Field mustard	nucleus	33.94	31.25
AT2G22850.2	Thale cress	nucleus	31.67	30.84
CDY37841	Canola	nucleus	28.05	30.39
Bra036025.1-P	Field mustard	nucleus	25.79	30.0
CDY68879	Canola	nucleus	23.98	27.18
AT4G37730.1	Thale cress	nucleus	37.1	26.89
Bra024424.1-P	Field mustard	nucleus	24.89	22.09

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102585909	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M1BXK2	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400021431	PGSC:PGSC0003DMG400021431	EnsemblPlants:PGSC0003DMT400055214
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF261	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002969CB1	RefSeq:XP_006363804.1	InterPro:bZIP	SEG:seg	:	:

Description

Ocs element-binding factor [Source:PGSC_GENE;Acc:PGSC0003DMG400021431]

Coordinates

chr2:-:42540950..42542009

Molecular Weight (calculated)

25776.1 Da

IEP (calculated)

9.048

GRAVY (calculated)

-1.115

Length

221 amino acids

Sequence
(BLAST)

001: MLSTFPATTL STDGLFPYLF PAFDGGFTPW ECIEPAFLFP QEVEEEEPVV SPKESPPPEP VILNSDSGSD DSKPNSVHSS SGSDDPNRNN NNNNNTNRCP
101: DERKRQRTTS NRDIDERKRR RMVSNRESAR RSRMRKQKHL ENLRNQANRL KVGNREIMNR LRLITYRCQV VQCENERVRT ESAILRQRLE GIRQILITRQ
201: LEQQFNSYSA WACNNMEQRP H

Best Arabidopsis Sequence Match ( AT2G22850.2 )
(BLAST)

001: MMSTVPAFTF TEPGLVNQLS DFQTGFTPWE LNCSDLFSTI HLEPVVPSPC SGESDAGSVK INTDFNGFDE SCIGSIKTNS GSDDSNLFHG VPSPQSDELD
101: SKNTKIRSNA TNHNRNKLNR SVLQVTDDRK RKRMESNRES AKRSRMRKQR HIDNLKDEAN RLGLENRELA NRLRIVLYNI ALMCTDNNQL LSEQEILRRR
201: FLEMRQILIF RQLQLNPSLI INHHHMI

Arabidopsis Description

AtbZIP6At2g22850 [Source:UniProtKB/TrEMBL;Acc:O81002]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.