Factsheet for Bra027855.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra010035.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59530.1	Bra000214.1-P	AT2G41090.1	17360592
AT1G59530.1	Bra000214.1-P	AT2G41100.1	17360592
AT1G59530.1	Bra018296.1-P	AT3G51920.1	17360592
AT1G59530.1	Bra033467.1-P	AT3G51920.1	17360592
AT1G59530.1	Bra039723.1-P	AT4G14640.1	17360592
AT1G59530.1	Bra002368.1-P	AT5G21274.1	17360592
AT1G59530.1	Bra006595.1-P	AT5G21274.1	17360592
AT1G59530.1	Bra010035.1-P	AT5G49450.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67239	Canola	nucleus	99.33	99.33
AT1G59530.1	Thale cress	nucleus	70.47	70.95
VIT_18s0001g08710.t01	Wine grape	nucleus	24.16	44.44
PGSC0003DMT400012575	Potato	nucleus	32.89	35.0
KRH52132	Soybean	nucleus	32.89	34.03
KRG88753	Soybean	nucleus	32.21	32.88
Bra031845.1-P	Field mustard	nucleus	24.16	26.47
Bra036025.1-P	Field mustard	nucleus	28.19	22.11
Bra011780.1-P	Field mustard	nucleus	30.87	18.7
Bra017850.1-P	Field mustard	nucleus	27.52	17.08
Bra024424.1-P	Field mustard	nucleus	24.83	14.86

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra027855	EnsemblPlants:Bra027855.1	EnsemblPlants:Bra027855.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M4EGE1	PFAM:PF07716	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF362	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00025427C0
InterPro:bZIP	SEG:seg	:	:	:	:

Description

AT1G59530 (E=3e-054) ATBZIP4 | ATBZIP4 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 4); DNA binding / transcription factor

Coordinates

chrA09:-:9290718..9291167

Molecular Weight (calculated)

17077.4 Da

IEP (calculated)

8.873

GRAVY (calculated)

-0.627

Length

149 amino acids

Sequence
(BLAST)

001: MSSTSLEPVH ICFDDATITG DEITEILAFL QSDTSDNPSG SNELEAPVDE RKRKRTMSNR ESAKRSRLRK KRRFEDLTEE VNRLKSKNQE LVNQLANVLS
101: CGNAISKENN RLKTESVCLE IRLLELYRFL VAMQSPISTR LNYISKLKI

Best Arabidopsis Sequence Match ( AT1G59530.1 )
(BLAST)

001: MFYTNMETVH NCFNDATITG DEIIDILAFL QSDESDNPSG INEVVPVDDK KRRRTISNRE SAKRSRMKKK KRFEELTEEV NRLNIRNQEL KNRLANVVSC
101: GNFISRENNR LKTESVCLEI RLLELYRFLV AMQSPISTSV NYITTLEI

Arabidopsis Description

BZIP4Basic leucine zipper 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ65]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.