Factsheet for PGSC0003DMT400069227

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	PGSC0003DMT400009994	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072970.2.1	Tomato	cytosol	95.49	95.04
VIT_16s0098g00580.t01	Wine grape	cytosol	54.16	52.41
OQU84154	Sorghum	nucleus	50.36	51.33
Zm00001d014950_P002	Maize	cytosol	49.88	50.85
HORVU6Hr1G004180.9	Barley	nucleus	49.17	50.12
KRH16939	Soybean	cytosol	37.29	50.0
TraesCS6D01G027400.1	Wheat	cytosol	48.22	49.27
GSMUA_Achr6P36850_001	Banana	cytosol	47.51	49.14
TraesCS6B01G032700.1	Wheat	cytosol	47.74	48.79
Zm00001d054072_P002	Maize	cytosol	49.64	48.72
KRH53668	Soybean	cytosol	43.71	47.18
TraesCS6A01G024000.1	Wheat	cytosol	47.98	46.98
KRH72573	Soybean	cytosol	47.03	45.94
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	42.28	44.84
CDX80465	Canola	cytosol	42.76	44.66
CDX88128	Canola	cytosol	42.04	44.36
AT5G24680.1	Thale cress	extracellular	41.81	44.11
HORVU0Hr1G014940.1	Barley	cytosol	39.91	43.41
Os02t0106700-01	Rice	cytosol, plastid	49.88	43.21
KRH64260	Soybean	cytosol	30.17	40.97

Protein Annotations

EnsemblPlants:PGSC0003DMT400069227	EnsemblPlantsGene:PGSC0003DMG400026928	EntrezGene:102598941	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681
PFAM:PF07910	PGSC:PGSC0003DMG400026928	RefSeq:XP_015164263.1	RefSeq:XP_015164264.1	SEG:seg	UniParc:UPI000295636E
UniProt:M1CK49	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026928]

Coordinates

chr6:-:53576172..53580544

Molecular Weight (calculated)

47463.5 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.457

Length

421 amino acids

Sequence
(BLAST)

001: MADFSVCPIC NLRVLTFELE RHANSHFDDE DIDKDFELAQ QIALDLACAP SSPPYIPVDD DMQCETSSRK DRESSFLKSE AKNCNPGGKD IDEKARILSS
101: VHSNETQPQI GQGLMDLLKN CLELETEKTT TILCGNVDHF QSSHSEDFGW GCGWRNIQML SSHLLKQRQE AREVLYGGSG FVPDIPSLQR WLEIAWKRGF
201: DKQGSEDFDQ AIYGKRNWIG TTECATLFRS FGLRARIVDF VSREIDIRSS EVGKCVGNMA PQVYGPMDRY LSKGKNVVSK AVPISYDVKA KPKVQQALID
301: WVWNYFADNK SRISGNHGIL VSQKAPLYFQ HDGHSRTIVG IQMKCQRNGP MQYNLLILDP GHTTESLAKS LKGNFGWQKL IKRGVHTLKK PLYQLCFLDP
401: GIASGEEIES LKNLHSIRVE A

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.