Factsheet for Zm00001d014950_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002611_P002
Zm00001d026069_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	Zm00001d002611_P002	AT1G12520.1	21798944
AT5G24680.1	Zm00001d026069_P001	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84154	Sorghum	nucleus	86.92	86.92
Zm00001d054072_P002	Maize	cytosol	89.1	85.78
HORVU6Hr1G004180.9	Barley	nucleus	69.25	69.25
TraesCS6D01G027400.1	Wheat	cytosol	68.52	68.69
TraesCS6B01G032700.1	Wheat	cytosol	68.28	68.45
TraesCS6A01G024000.1	Wheat	cytosol	68.28	65.58
Os02t0106700-01	Rice	cytosol, plastid	73.85	62.76
HORVU0Hr1G014940.1	Barley	cytosol	56.42	60.21
GSMUA_Achr6P36850_001	Banana	cytosol	52.78	53.56
KRH53668	Soybean	cytosol	49.15	52.05
KRH16939	Soybean	cytosol	38.74	50.96
PGSC0003DMT400069227	Potato	cytosol	50.85	49.88
Solyc06g072970.2.1	Tomato	cytosol	50.61	49.41
VIT_16s0098g00580.t01	Wine grape	cytosol	51.33	48.74
KRH72573	Soybean	cytosol	48.91	46.87
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	44.55	46.35
CDX88128	Canola	cytosol	44.55	46.12
AT5G24680.1	Thale cress	extracellular	44.31	45.86
CDX80465	Canola	cytosol	44.07	45.16
KRH64260	Soybean	cytosol	32.45	43.23

Protein Annotations

EMBL:BT034301	EnsemblPlants:Zm00001d014950_P002	EnsemblPlants:Zm00001d014950_T002	EnsemblPlantsGene:Zm00001d014950	EntrezGene:100192023	Gene3D:3.90.70.130
InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681	PFAM:PF07910	ProteinID:AQK67698.1	ProteinID:AQK67699.1	SEG:seg
UniParc:UPI00017B68A8	UniProt:B4FB13	MapMan:35.2	:	:	:

Description

Peptidase C78 ubiquitin fold modifier-specific peptidase 1/ 2

Coordinates

chr5:+:69573089..69578098

Molecular Weight (calculated)

46767.0 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.546

Length

413 amino acids

Sequence
(BLAST)

001: MDMISSCPIC NIQVLTVELE WHANSHFDDD QLQRDIELAH QIAVAESSTD TMNDPKHYSG SFTSDSNTIG ASSSHSGYSH HYSELLDEQI SCMVRAQIRS
101: KVQEVEGGIM SLLRSCLESE AGSSKSMISG YIDHHQSLSS EDKGWGCGWR NIQMLSSHLL KQRQEAREVL FGGSGFVPDI PSLQRWLEIA WDKKFDTIGS
201: SHFHNKVYGA KKWIGTTECA TLFRSFGLRA KIVDFDSTES SDLQSKNSSH AASQVRGLMD KFLIKSNSPK SSSEFCQEDA ESMRGQHALV DWVWNYFACE
301: RSDRLTTQRA TVSNKTPLYF QHQGHSRTIV GIQKEMVHRG SQEQYTLLIL DPGHRTADLE RSLRSKNGWQ RLVKRGVHTL RKPQYQLCYV DPGIASSEEM
401: EQLKTIDSML VRF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.