CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47956	Canola	plastid	89.93	95.63
Bra041008.1-P	Field mustard	mitochondrion, plastid	87.69	79.39
AT1G44920.1	Thale cress	mitochondrion, plastid	74.63	77.52
KRH15453	Soybean	extracellular, golgi, plastid	21.27	62.64
VIT_18s0001g08630.t01	Wine grape	plastid	58.21	60.0
GSMUA_Achr4P07390_001	Banana	plastid	50.0	50.38
Os03t0729100-01	Rice	plastid	41.04	50.23
Solyc04g077500.2.1	Tomato	plastid	52.61	49.13
KRH05538	Soybean	plastid	48.88	48.88
Zm00001d033873_P001	Maize	plastid	47.39	48.66
PGSC0003DMT400012587	Potato	plastid	51.87	48.43
EER90941	Sorghum	plastid	47.01	47.37
Zm00001d031553_P001	Maize	endoplasmic reticulum, extracellular	17.54	47.0
TraesCS4D01G059100.1	Wheat	plastid	46.27	46.27
TraesCS4A01G255600.1	Wheat	plastid	45.15	45.83
TraesCS4B01G059400.1	Wheat	plastid	43.28	43.61

Protein Annotations

EnsemblPlants:CDY12577	EnsemblPlantsGene:GSBRNA2T00061993001	GO:A0A078FHY8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF3054	PFAM:PF11255	ProteinID:CDY12577	ProteinID:CDY12577.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EB174C	UniProt:A0A078FHY8	MapMan:35.2	:	:	:

Description

BnaC06g01030DBnaC06g01030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHY8]

Coordinates

chrLK032024:-:792207..794125

Molecular Weight (calculated)

29160.4 Da

IEP (calculated)

10.657

GRAVY (calculated)

0.116

Length

268 amino acids

Sequence
(BLAST)

001: MLVLRAPTGP VSAARFITKP NPRIPSPDPW LGLVPSANTR RRRRVVLTLS NSDSNGSVKS ATPPSTGDDT VFVGQENVPL EGVIQFDKPK ADASIKKWGR
101: VALLAGGDVL ALLIFSAIGR FSHGFPVFSS DTLHTADPFI AGWFLSAYFL GGYAEEGRGM KGQSKAVVAA AKSWALGVPK RCSEFWLMIY LISNQIQLGV
201: IIRSTSSGHI PSYSFILVTM GSTAVLLIGW RALLFSVLPS ESKKKDDTYR KGSAFELFEL LTSLIRRW

Best Arabidopsis Sequence Match ( AT1G44920.1 )
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW

Arabidopsis Description

T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.