Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012496.1-P | Field mustard | nucleus | 97.65 | 97.65 |
| CDY03873 | Canola | nucleus | 95.77 | 95.77 |
| CDY69498 | Canola | nucleus | 87.79 | 88.63 |
| CDY24418 | Canola | nucleus | 87.32 | 88.15 |
| AT1G24625.1 | Thale cress | nucleus | 83.57 | 85.17 |
| CDY07483 | Canola | nucleus | 39.44 | 34.15 |
| CDY65468 | Canola | nucleus | 39.91 | 32.44 |
| CDY50321 | Canola | nucleus | 39.44 | 31.46 |
| CDY60000 | Canola | nucleus, plastid | 22.07 | 31.33 |
| CDY58140 | Canola | nucleus, plastid | 21.6 | 30.67 |
| CDY39248 | Canola | cytosol | 22.54 | 29.63 |
| CDY11864 | Canola | nucleus, plastid | 20.66 | 29.33 |
| CDX79357 | Canola | nucleus | 28.64 | 26.99 |
| CDX67963 | Canola | nucleus | 28.17 | 26.55 |
| CDY39947 | Canola | nucleus | 27.23 | 26.36 |
| CDY66132 | Canola | nucleus | 27.7 | 25.88 |
| CDY71759 | Canola | nucleus | 26.76 | 25.11 |
| CDX87338 | Canola | nucleus | 26.29 | 25.0 |
| CDX69795 | Canola | nucleus | 25.35 | 22.31 |
| CDX97070 | Canola | nucleus | 24.88 | 21.9 |
| CDX88160 | Canola | nucleus | 24.88 | 21.54 |
| CDY05474 | Canola | nucleus | 24.88 | 21.37 |
| CDY05377 | Canola | nucleus | 24.41 | 20.97 |
| CDY19813 | Canola | nucleus | 23.94 | 20.08 |
| CDX87097 | Canola | plastid | 9.86 | 15.11 |
Protein Annotations
| EnsemblPlants:CDY72110 | EnsemblPlantsGene:GSBRNA2T00024928001 | Gene3D:3.30.160.60 | GO:A0A078K0A4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF239 |
| PFscan:PS50157 | ProteinID:CDY72110 | ProteinID:CDY72110.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EED144 | UniProt:A0A078K0A4 | MapMan:15.5.15 | : | : | : |
Description
BnaA07g36690DBnaA07g36690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0A4]
Coordinates
chrLK049006:+:59..1322
Molecular Weight (calculated)
23988.0 Da
IEP (calculated)
6.603
GRAVY (calculated)
-0.684
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MTESDDASRE LPVREGETLS NQDLSKPEAI IPVSLDLKLN DSFNDEQKGT KRESNPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMYMGRMFGH
101: HHRPYTYSSS SLGMQTHSGL LHHTLSQPQP PPPPLARFHQ QGYFGNTVPL FFDYDDGSDF FWPGSFRQVV EEVEAPVVVA VTESGLDLNS AAANESVVDI
201: NNNSLKPDLT LRL
101: HHRPYTYSSS SLGMQTHSGL LHHTLSQPQP PPPPLARFHQ QGYFGNTVPL FFDYDDGSDF FWPGSFRQVV EEVEAPVVVA VTESGLDLNS AAANESVVDI
201: NNNSLKPDLT LRL
001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
Arabidopsis Description
ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.