CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76489
CDX78923
CDX86457
CDX99397
CDY08148
CDY36901
CDY44976
CDY46555
CDY52947
CDY58069
CDY58070
CDY58518
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	CDY46555	AT1G51580.1	21798944
AT5G17790.1	CDY52947	AT1G51580.1	21798944
AT5G17790.1	CDX86457	AT3G27960.1	21798944
AT5G17790.1	CDY58518	AT3G27960.1	21798944
AT5G17790.1	CDY36901	AT3G48150.1	21798944
AT5G17790.1	CDY44976	AT3G48150.1	21798944
AT5G17790.1	CDY58069	AT3G48150.1	21798944
AT5G17790.1	CDY58070	AT3G48150.1	21798944
AT5G17790.1	CDY70805	AT3G48150.1	21798944
AT5G17790.1	CDY08148	AT3G49580.1	21798944
AT5G17790.1	CDX76489	AT4G19170.1	15340011
AT5G17790.1	CDX78923	AT4G19170.1	15340011
AT5G17790.1	CDX99397	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002106.1-P	Field mustard	plastid	95.67	95.67
CDY16887	Canola	plastid	82.68	82.57
CDX70775	Canola	plastid	69.13	71.64
CDX78760	Canola	plastid, vacuole	67.88	69.33
AT5G17790.1	Thale cress	plastid	58.52	55.28
KRH64967	Soybean	plastid	43.99	38.37
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	46.37	37.77
KRG94930	Soybean	mitochondrion, plastid, vacuole	43.16	37.09
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	43.3	35.47
PGSC0003DMT400028376	Potato	plastid	43.02	35.44
EES01648	Sorghum	plastid	42.18	33.59
Zm00001d012529_P001	Maize	plastid	40.5	32.12
Os01t0815700-01	Rice	plastid	42.04	31.68
Zm00001d043095_P004	Maize	mitochondrion	40.36	30.07
TraesCS3B01G370800.2	Wheat	plastid	41.34	26.98
TraesCS3D01G332700.1	Wheat	plastid	41.48	26.9
TraesCS3A01G339100.1	Wheat	nucleus	41.06	26.65
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	40.64	26.53
GSMUA_Achr7P21740_001	Banana	nucleus	39.94	25.44
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	24.86	24.76
CDY40590	Canola	plastid	13.27	22.95
CDX93678	Canola	plastid	13.13	22.54
CDY11563	Canola	mitochondrion	12.43	19.31
CDX96267	Canola	mitochondrion	12.43	19.14
CDY41729	Canola	nucleus	15.36	13.29
CDY53578	Canola	nucleus	15.08	13.0

Protein Annotations

MapMan:16.12.5.3	Gene3D:2.20.28.140	Gene3D:4.10.1060.10	GO:A0A078HM64	UniProt:A0A078HM64	EnsemblPlants:CDY38459
ProteinID:CDY38459	ProteinID:CDY38459.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00065902001
InterPro:IPR001876	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30
SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI0004EEB4DF	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

BnaA10g16990DBnaA10g16990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM64]

Coordinates

chrLK032424:-:131606..134173

Molecular Weight (calculated)

80870.4 Da

IEP (calculated)

8.579

GRAVY (calculated)

-0.771

Length

716 amino acids

Sequence
(BLAST)

001: MNNSTRILSL FSPPPPILRG LFISRLTNLR RLHRLASAPS FVNSSHRRSP LSFPPLIPTI PLSRFHTHRA RTSASDSVPS HHHQLPEWAE LIKSLSKAGY
101: FTDSGFENEF FPGLPEELLR QALACLALAR DRPELLEMVS RRDVQVVVEN VKPFLFRTGA DSLKRMRLYL TSGRQGIGKV LDVDKASTVD LMRLLLSYVV
201: DLSSSEGSKH HDREIMESSV RNLLSEIAKM SFCTPESNGA MQNKFSERNG GLFQKNVEKK QGDWICSRCS GLNFARNVKC FQCDEARPKR QLTGSEWECP
301: QCDFYNYGRN IACLRCDCKR PGDFSLNLAN SGSAYSKDPE LERRLVENEE KAQRWFSKLA QGGGSDANSV DTDEDFPEIM PLRKGVNRYV VNTRKTPLER
401: RLANTETDGT KTNRSLNEIL GSSSSSASSR RFESSQVVNS DFVPFVPLPS DMFAKKPDKE GTQKGQMDDV SDDNGILYKE DKSSGKETDE PEKDEKESDW
501: LKKVTELHKV SDPESSIPEE NSPEKMPMRK GENQYVVSRK KDRSLTSPAN KRRMSIETKD SDFVPFVPFP PDYFAKHKQP EVTTTTTDTT SAPVTKNPSQ
601: VVQKEPSSSI PEPMAGNIRN GKSLEGSLVK EPDLLDMSEE AKAERWFKRV AEIKNISELS QIPDEDFPSI MPMRKGVNRF VVSKRKTPLE RRLASQRQQR
701: DPPPFTDSDP ASNRDT

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.