CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70775
CDX78760
CDX88588
CDY11904
CDY16887
CDY32760
CDY32882
CDY38459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	CDX70775	AT5G17790.1	15340011
AT4G19170.1	CDX78760	AT5G17790.1	15340011
AT4G19170.1	CDY16887	AT5G17790.1	15340011
AT4G19170.1	CDY38459	AT5G17790.1	15340011
AT4G19170.1	CDX88588	AT5G56760.1	21798944
AT4G19170.1	CDY11904	AT5G56760.1	21798944
AT4G19170.1	CDY32760	AT5G56760.1	21798944
AT4G19170.1	CDY32882	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020970.1-P	Field mustard	plastid	92.86	87.13
CDX99397	Canola	plastid	87.03	78.08
AT4G19170.1	Thale cress	plastid	86.65	77.48
CDX78923	Canola	plastid	86.65	77.35
VIT_02s0087g00910.t01	Wine grape	plastid	65.79	58.43
KRH76475	Soybean	plastid	63.35	57.12
PGSC0003DMT400004981	Potato	plastid	63.16	56.85
Solyc08g075490.2.1	Tomato	plastid	63.16	56.57
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	25.38	56.25
Solyc08g075480.2.1	Tomato	plastid	58.27	53.73
PGSC0003DMT400004975	Potato	plastid	33.46	52.05
KXG30924	Sorghum	plastid	57.71	48.19
Os02t0704000-01	Rice	plastid	57.71	48.12
TraesCS6A01G271600.1	Wheat	plastid	57.52	47.89
HORVU6Hr1G068720.1	Barley	plastid	57.71	47.74
TraesCS6D01G251800.1	Wheat	plastid	57.33	47.73
Zm00001d051556_P001	Maize	plastid	57.14	47.65
TraesCS6B01G298800.1	Wheat	plastid	57.52	47.59
Zm00001d017766_P001	Maize	plastid	56.58	47.1
Os12t0435200-01	Rice	plastid	47.37	43.75
GSMUA_Achr4P19020_001	Banana	plastid	39.29	39.73
CDX82482	Canola	cytosol	27.82	37.37
CDY57471	Canola	cytosol	27.26	36.62
CDY39117	Canola	mitochondrion	36.09	34.72
CDY26294	Canola	plastid	37.41	33.79
CDY61838	Canola	plastid	37.41	33.79
CDY53711	Canola	cytosol	32.52	32.95
CDY33218	Canola	plastid	36.65	32.61
CDX93902	Canola	cytosol	32.14	32.57
CDX98456	Canola	cytosol	15.23	31.76
CDX77467	Canola	plastid	34.4	31.28
CDX85148	Canola	cytosol	34.4	31.28
CDY34746	Canola	cytosol	7.52	31.25
CDX98455	Canola	plastid	34.96	31.16
CDX97576	Canola	plastid	34.96	31.16
CDX88443	Canola	plastid	35.15	31.06
CDY52448	Canola	plastid	35.15	31.06
CDY01534	Canola	cytosol, plastid	34.02	31.05
CDX78842	Canola	plastid	33.83	30.98
CDY34748	Canola	endoplasmic reticulum, extracellular	28.01	30.85
CDX99475	Canola	plastid	33.65	30.81
CDY55629	Canola	cytosol, plastid	33.65	30.7
CDX98457	Canola	plastid	17.86	30.16
CDX76782	Canola	mitochondrion	31.95	27.78
CDX76783	Canola	plastid	31.2	27.17
CDY34747	Canola	cytosol	6.58	25.93

Protein Annotations

EnsemblPlants:CDX76489	EnsemblPlantsGene:GSBRNA2T00126907001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	PFAM:PF03055
ProteinID:CDX76489	ProteinID:CDX76489.1	SEG:seg	UniParc:UPI0004EDFF28	MapMan:50.1.12	:

Description

BnaA08g09110D

Coordinates

chrLK031807:-:1571007..1572788

Molecular Weight (calculated)

58574.1 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.129

Length

532 amino acids

Sequence
(BLAST)

001: MYSVSSSSFI STFSPKPSLH LRHSSSSRLL PRINSTVVEE RSPIINPSEN NGPPHKKLYT RTNRNAVASP AKLRPETTLV AALFTTVEDA INTFIDPPSR
101: PSVDPKHVLS GNFAPVLDEL PPTECEIIHG SLPPSLDGAY IRNGPNPQFL PRGPYHLFDG DGMLHAIRIR NAPVIPNVFS GFNGVTASVA RGALTALRVL
201: AGQYNPVNGI GLANTSLAFF CNRLFALGES DLPYAVRLTD TGDIETIGRF DFDGKLEMSM TAHPKTDPET GETFAFRYSP VPPFLTFFRF DSTGKKQRDV
301: PVYSLTSPSF VHDFAITKRH AIFAEIQIVM RMNIMDLVLE GGSPVGADNR KTPRLGVIPR NAGDDSEMKW FEVPGFNIIH AINAWDENDG TTVVLIAPNI
401: MSIEHTLERM DLVHSLVEKV KIDLVTGIVT RHPISARNLD FAVINPAFLG RRSRYVYAAI GDPMPKISGV EAEEDDGYVV TYVHDEVAGE SKFLVMDAKS
501: PELEIVAAVR LPRRVPYGFH GLFVKESDVN KL

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.