CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98457	Canola	plastid	52.43	99.37
Bra027336.1-P	Field mustard	plastid	98.33	98.33
CDX98455	Canola	plastid	97.32	97.32
CDX98456	Canola	cytosol	41.37	96.86
CDX82482	Canola	cytosol	61.64	92.93
CDY39117	Canola	mitochondrion	85.93	92.77
CDY57471	Canola	cytosol	61.14	92.17
CDY33218	Canola	plastid	91.79	91.64
AT3G14440.1	Thale cress	plastid	90.62	90.32
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	65.66	77.47
VIT_19s0093g00550.t01	Wine grape	plastid	71.69	70.28
Zm00001d027690_P001	Maize	cytosol	9.05	70.13
Zm00001d008638_P001	Maize	cytosol	9.55	69.51
Zm00001d023690_P001	Maize	cytosol	15.24	69.47
Solyc07g056570.1.1	Tomato	plastid	70.35	69.42
Os12t0617400-01	Rice	cytosol	31.83	67.14
CDY26294	Canola	plastid	65.83	66.72
CDY61838	Canola	plastid	65.66	66.55
CDX88443	Canola	plastid	67.0	66.45
CDY52448	Canola	plastid	66.83	66.28
CDX99475	Canola	plastid	62.48	64.2
GSMUA_Achr6P31180_001	Banana	plastid	64.82	64.18
KRH43866	Soybean	plastid	49.25	64.05
GSMUA_Achr4P22870_001	Banana	plastid	64.15	63.73
CDX78842	Canola	plastid	61.81	63.51
GSMUA_Achr2P12950_001	Banana	plastid	62.48	63.33
CDY55629	Canola	cytosol, plastid	61.81	63.29
CDY01534	Canola	cytosol, plastid	61.64	63.12
GSMUA_Achr5P02570_001	Banana	plastid	64.49	63.11
GSMUA_Achr7P01250_001	Banana	plastid	63.48	62.85
TraesCS5B01G375900.1	Wheat	plastid	62.48	62.69
TraesCS5D01G383500.1	Wheat	plastid	62.48	62.69
TraesCS5A01G374000.1	Wheat	plastid	61.98	62.61
Os03t0645900-00	Rice	plastid	63.65	62.5
GSMUA_Achr4P31460_001	Banana	plastid	62.81	62.19
HORVU5Hr1G008050.1	Barley	plastid	63.15	62.11
Zm00001d033222_P001	Maize	extracellular	62.65	61.92
Zm00001d031086_P001	Maize	plastid	58.96	61.86
TraesCS5B01G029300.1	Wheat	plastid	63.48	61.73
Zm00001d013689_P001	Maize	plastid	61.81	61.4
EER93751	Sorghum	plastid	62.81	61.37
TraesCS5D01G038800.1	Wheat	plastid	63.15	61.3
Zm00001d018819_P001	Maize	plastid	58.79	61.26
OQU88453	Sorghum	plastid	58.63	61.08
Zm00001d007876_P001	Maize	plastid	58.29	60.52
TraesCS2D01G251600.1	Wheat	plastid	58.29	59.79
Os07t0154100-01	Rice	plastid	58.29	59.79
HORVU5Hr1G054970.1	Barley	cytosol	60.64	59.54
Zm00001d041319_P001	Maize	plastid	59.46	58.77
TraesCS2B01G268400.1	Wheat	plastid	58.46	58.56
Zm00001d000095_P001	Maize	cytosol	16.08	58.54
HORVU5Hr1G092850.2	Barley	plastid	62.98	58.39
HORVU5Hr1G044510.1	Barley	cytosol	58.46	58.17
TraesCS2A01G250600.1	Wheat	plastid	57.45	57.84
Zm00001d000157_P001	Maize	cytosol	9.72	55.24
CDX77467	Canola	plastid	52.6	53.68
CDX85148	Canola	cytosol	52.43	53.5
KRH13600	Soybean	plastid	47.91	49.74
Zm00001d023458_P001	Maize	cytosol	11.73	49.65
Zm00001d042076_P001	Maize	cytosol, plastid	33.67	47.86
Zm00001d022623_P001	Maize	cytosol	27.14	43.43
Zm00001d035724_P001	Maize	plastid	40.54	38.11
CDY53711	Canola	cytosol	32.33	36.76
CDX93902	Canola	cytosol	31.99	36.38
Zm00001d019813_P001	Maize	plastid	11.39	35.98
CDY34746	Canola	cytosol	7.54	35.16
CDX76489	Canola	plastid	31.16	34.96
CDX99397	Canola	plastid	34.34	34.57
CDX78923	Canola	plastid	34.17	34.23
CDY34748	Canola	endoplasmic reticulum, extracellular	27.64	34.16
CDX76782	Canola	mitochondrion	31.16	30.39
Zm00001d009286_P001	Maize	plastid	12.56	29.76
CDX76783	Canola	plastid	30.32	29.62
CDY34747	Canola	cytosol	6.53	28.89
Zm00001d033377_P001	Maize	plastid	12.9	27.11
Zm00001d027592_P001	Maize	mitochondrion	18.93	26.53

Protein Annotations

EnsemblPlants:CDX97576	EnsemblPlantsGene:GSBRNA2T00104791001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055
ProteinID:CDX97576	ProteinID:CDX97576.1	SEG:seg	UniParc:UPI0004EE7F50	MapMan:11.1.1.4	:

Description

BnaA05g25030D

Coordinates

chrLK031900:-:388067..390271

Molecular Weight (calculated)

65812.1 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.297

Length

597 amino acids

Sequence
(BLAST)

001: MASFTATTAV SRRWVGGNHT KPPLSSSQSS ALNNSCSVPM TNRSQRKLNV SSALHTHPAL HFPKQSSTSP AIIVNPKTKE SDTKQMNLFQ RAAAAALDAA
101: EGFLVSHERQ HPLPKTADPS VQIAGNFAPV NEQPLRRNLP VVGKIPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV TFEDGSASYA CRFTLTNRFI
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGLVDP AHGTGVANAG LVYFNNRLLA MSEDDLPYQV RITPGGDLKT VGRYDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGE KSPDVEIQLD QPTMMHDFAI TENFVVIPDQ QVVFKLQEMI RGGSPVIYDK EKVARFGILD KYAADSSGIR
401: WIEARNCFCF HLWNAWEEPE TEEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLRTGE STRRPIISDG DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLATGEVKKH LYGDDRYGGE PLFLPGEGAE DDGHILCFVH DEMTWKSELQ IVNAVSLEVE ATVKLPSRVP YGFHGTFIGA SDLANQV

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.