Factsheet for Solyc07g056570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	81.65	97.63
CDX98456	Canola	cytosol	33.72	80.0
CDX82482	Canola	cytosol	51.57	78.79
Bra001552.1-P	Field mustard	cytosol	51.24	78.28
CDY57471	Canola	cytosol	51.24	78.28
CDY39117	Canola	mitochondrion	67.77	74.14
Solyc08g016720.1.1	Tomato	plastid	69.75	72.63
VIT_19s0093g00550.t01	Wine grape	plastid	72.73	72.25
AT3G14440.1	Thale cress	plastid	70.41	71.12
CDY33218	Canola	plastid	70.08	70.9
Bra021558.1-P	Field mustard	plastid	69.59	70.4
CDX97576	Canola	plastid	69.42	70.35
Bra027336.1-P	Field mustard	plastid	69.26	70.18
CDX98455	Canola	plastid	69.26	70.18
KRH43866	Soybean	plastid	51.57	67.97
Zm00001d008638_P001	Maize	cytosol	9.09	67.07
GSMUA_Achr4P22870_001	Banana	plastid	66.12	66.56
Os12t0617400-01	Rice	cytosol	31.07	66.43
Zm00001d023690_P001	Maize	cytosol	14.38	66.41
Zm00001d027690_P001	Maize	cytosol	8.43	66.23
GSMUA_Achr2P12950_001	Banana	plastid	62.81	64.52
GSMUA_Achr5P02570_001	Banana	plastid	64.96	64.43
Zm00001d031086_P001	Maize	plastid	59.34	63.09
GSMUA_Achr7P01250_001	Banana	plastid	62.81	63.02
GSMUA_Achr6P31180_001	Banana	plastid	62.64	62.85
GSMUA_Achr4P31460_001	Banana	plastid	62.48	62.69
OQU88453	Sorghum	plastid	59.01	62.3
CDX98457	Canola	plastid	32.4	62.22
TraesCS5A01G374000.1	Wheat	plastid	60.5	61.93
Zm00001d018819_P001	Maize	plastid	58.51	61.78
TraesCS5B01G375900.1	Wheat	plastid	60.66	61.68
Zm00001d007876_P001	Maize	plastid	58.51	61.57
TraesCS5D01G383500.1	Wheat	plastid	60.5	61.51
Os03t0645900-00	Rice	plastid	61.32	61.02
HORVU5Hr1G008050.1	Barley	plastid	60.83	60.63
TraesCS2D01G251600.1	Wheat	plastid	58.18	60.48
Zm00001d033222_P001	Maize	extracellular	60.33	60.43
TraesCS5B01G029300.1	Wheat	plastid	61.32	60.42
EER93751	Sorghum	plastid	60.83	60.23
Os07t0154100-01	Rice	plastid	57.85	60.14
TraesCS5D01G038800.1	Wheat	plastid	60.83	59.84
Zm00001d000095_P001	Maize	cytosol	16.2	59.76
HORVU5Hr1G054970.1	Barley	cytosol	59.67	59.38
Zm00001d041319_P001	Maize	plastid	59.17	59.27
Zm00001d013689_P001	Maize	plastid	58.68	59.07
TraesCS2B01G268400.1	Wheat	plastid	58.18	59.06
TraesCS2A01G250600.1	Wheat	plastid	57.36	58.52
HORVU5Hr1G044510.1	Barley	cytosol	56.86	57.33
HORVU5Hr1G092850.2	Barley	plastid	60.66	56.99
Solyc05g053530.1.1	Tomato	plastid	52.73	54.72
Zm00001d000157_P001	Maize	cytosol	9.26	53.33
KRH13600	Soybean	plastid	49.92	52.52
Zm00001d042076_P001	Maize	cytosol, plastid	33.72	48.57
Zm00001d023458_P001	Maize	cytosol	11.07	47.52
Zm00001d022623_P001	Maize	cytosol	27.11	43.97
Zm00001d035724_P001	Maize	plastid	40.0	38.11
Solyc01g087260.2.1	Tomato	plastid	32.73	36.33
Solyc01g087250.2.1	Tomato	cytosol, plastid	32.23	35.78
Solyc08g075490.2.1	Tomato	plastid	33.55	34.18
Zm00001d019813_P001	Maize	plastid	10.58	33.86
Solyc08g075480.2.1	Tomato	plastid	31.24	32.76
Zm00001d009286_P001	Maize	plastid	11.57	27.78
Zm00001d033377_P001	Maize	plastid	11.9	25.35
Zm00001d027592_P001	Maize	mitochondrion	17.69	25.12
Solyc08g066720.1.1	Tomato	cytosol	16.86	24.64

Protein Annotations

MapMan:11.1.1.4	ProteinID:CAD30202.1	InterPro:Carotenoid_Oase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006970
GO:GO:0008150	GO:GO:0008152	GO:GO:0009414	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009628	GO:GO:0016020	GO:GO:0016702	GO:GO:0042538	GO:GO:0045549
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	UniProt:O24023	PFAM:PF03055	PANTHER:PTHR10543
PANTHER:PTHR10543:SF42	EnsemblPlantsGene:Solyc07g056570.1	EnsemblPlants:Solyc07g056570.1.1	UniParc:UPI000000D00D	EMBL:Z97215	SEG:seg

Description

9-cis-epoxycarotenoid dioxygenase [Source:UniProtKB/TrEMBL;Acc:O24023]

Coordinates

chr7:-:64361346..64363163

Molecular Weight (calculated)

67320.9 Da

IEP (calculated)

6.698

GRAVY (calculated)

-0.406

Length

605 amino acids

Sequence
(BLAST)

001: MATTTSHATN TWIKTKLSMP SSKEFGFASN SISLLKNQHN RQSLNINSSL QAPPILHFPK QSSNYQTPKN NTISHPKQEN NNSSSSSTSK WNLVQKAAAM
101: ALDAVESALT KHELEHPLPK TADPRVQISG NFAPVPENPV CQSLPVTGKI PKCVQGVYVR NGANPLFEPT AGHHFFDGDG MVHAVQFKNG SASYACRFTE
201: TERLVQEKAL GRPVFPKAIG ELHGHSGIAR LMLFYARGLF GLVDHSKGTG VANAGLVYFN NRLLAMSEDD LPYHVKVTPT GDLKTEGRFD FDGQLKSTMI
301: AHPKLDPVSG ELFALSYDVI QKPYLKYFRF SKNGEKSNDV EIPVEDPTMM HDFAITENFV VIPDQQVVFK MSEMIRGGSP VVYDKNKVSR FGILDKYAKD
401: GSDLKWVEVP DCFCFHLWNA WEEAETDEIV VIGSCMTPPD SIFNECDEGL KSVLSEIRLN LKTGKSTRKS IIENPDEQVN LEAGMVNRNK LGRKTEYAYL
501: AIAEPWPKVS GFAKVNLFTG EVEKFIYGDN KYGGEPLFLP RDPNSKEEDD GYILAFVHDE KEWKSELQIV NAMSLKLEAT VKLPSRVPYG FHGTFINAND
601: LANQA

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.