Factsheet for Solyc08g016720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Solyc01g057780.2.1	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039054	Potato	plastid	96.9	97.07
VIT_10s0003g03750.t01	Wine grape	plastid	76.59	73.55
Bra012603.1-P	Field mustard	cytosol	54.73	71.95
Solyc07g056570.1.1	Tomato	plastid	72.63	69.75
Zm00001d008638_P001	Maize	cytosol	9.64	68.29
Bra032359.1-P	Field mustard	plastid	69.02	68.2
CDY61838	Canola	plastid	68.85	67.91
AT1G30100.1	Thale cress	plastid	68.67	67.74
CDY26294	Canola	plastid	68.5	67.57
Zm00001d027690_P001	Maize	cytosol	8.95	67.53
Zm00001d023690_P001	Maize	cytosol	15.15	67.18
KRH58642	Soybean	plastid	65.92	65.14
Os12t0617400-01	Rice	cytosol	31.5	64.66
GSMUA_Achr4P22870_001	Banana	plastid	66.78	64.56
KRH42549	Soybean	plastid	65.4	64.52
AT4G18350.1	Thale cress	cytosol, plastid	64.72	64.49
CDY55629	Canola	cytosol, plastid	64.54	64.32
CDY01534	Canola	cytosol, plastid	64.2	63.98
GSMUA_Achr5P02570_001	Banana	plastid	66.78	63.61
GSMUA_Achr2P12950_001	Banana	plastid	64.2	63.33
Bra013298.1-P	Field mustard	plastid	63.17	63.17
CDX99475	Canola	plastid	62.99	62.99
GSMUA_Achr6P31180_001	Banana	plastid	65.23	62.85
GSMUA_Achr7P01250_001	Banana	plastid	65.06	62.69
CDX78842	Canola	plastid	62.48	62.48
GSMUA_Achr4P31460_001	Banana	plastid	64.37	62.02
TraesCS5B01G375900.1	Wheat	plastid	62.99	61.51
TraesCS5A01G374000.1	Wheat	plastid	62.31	61.25
TraesCS5D01G383500.1	Wheat	plastid	62.48	61.01
Zm00001d031086_P001	Maize	plastid	59.38	60.63
Zm00001d000095_P001	Maize	cytosol	17.04	60.37
Os03t0645900-00	Rice	plastid	62.48	59.7
OQU88453	Sorghum	plastid	58.69	59.51
Zm00001d018819_P001	Maize	plastid	58.52	59.34
HORVU5Hr1G008050.1	Barley	plastid	61.96	59.31
TraesCS5B01G029300.1	Wheat	plastid	62.48	59.12
EER93751	Sorghum	plastid	62.13	59.08
TraesCS5D01G038800.1	Wheat	plastid	62.48	59.02
Zm00001d007876_P001	Maize	plastid	58.35	58.96
Zm00001d033222_P001	Maize	extracellular	61.27	58.94
HORVU5Hr1G054970.1	Barley	cytosol	61.27	58.55
Zm00001d013689_P001	Maize	plastid	60.41	58.4
TraesCS2D01G251600.1	Wheat	plastid	58.35	58.25
Os07t0154100-01	Rice	plastid	57.49	57.39
Zm00001d041319_P001	Maize	plastid	59.55	57.28
HORVU5Hr1G092850.2	Barley	plastid	62.82	56.68
HORVU5Hr1G044510.1	Barley	cytosol	58.35	56.5
TraesCS2B01G268400.1	Wheat	plastid	57.83	56.38
TraesCS2A01G250600.1	Wheat	plastid	57.14	55.99
Zm00001d000157_P001	Maize	cytosol	9.98	55.24
Solyc05g053530.1.1	Tomato	plastid	51.98	51.8
Zm00001d023458_P001	Maize	cytosol	11.88	48.94
Zm00001d042076_P001	Maize	cytosol, plastid	33.39	46.19
Zm00001d022623_P001	Maize	cytosol	27.37	42.63
Zm00001d035724_P001	Maize	plastid	40.28	36.85
Solyc01g087250.2.1	Tomato	cytosol, plastid	33.56	35.78
Solyc01g087260.2.1	Tomato	plastid	33.56	35.78
Zm00001d019813_P001	Maize	plastid	10.33	31.75
Solyc08g075490.2.1	Tomato	plastid	32.01	31.31
Solyc08g075480.2.1	Tomato	plastid	30.29	30.5
Zm00001d009286_P001	Maize	plastid	11.19	25.79
Zm00001d027592_P001	Maize	mitochondrion	18.76	25.59
Solyc08g066720.1.1	Tomato	cytosol	17.38	24.4
Zm00001d033377_P001	Maize	plastid	11.53	23.59

Protein Annotations

EnsemblPlants:Solyc08g016720.1.1	EnsemblPlantsGene:Solyc08g016720.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	UniParc:UPI000276B886	UniProt:K4CJJ1	MapMan:11.1.1.4

Description

No Description!

Coordinates

chr8:+:8734293..8736038

Molecular Weight (calculated)

64837.1 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.333

Length

581 amino acids

Sequence
(BLAST)

001: MTSTIANYRV SHSFSPSTSY SLDFTLPSKS ISMKNHTTTK TKIHSALLTL PKQNNTPKNQ PQFQTSHWNF FQKAAAKALD IVESALVSRE LQNPLPKTAD
101: PRVQIAGNFA PVPEQSVRHN LPVTGTIPDC INGVYVRNGA NPLFEPVAGH HLFDGDGMVH AVTVENGSVS YSCRFTETER LVQERELGHP VFPKAIGELH
201: GHSGIARLLL FYARGVFGLV DHSHGTGVAN AGLVFFNNRL LAMSEDDVPY HVQVLPSGDL QTVGRYNFDD QLKSTMIAHP KIDPVSGELF ALSYDVVQKP
301: YLKSFKFSPD GEKSPDVEIP LDVPTMMHDF AITENYVVIP DQQVVFKLQE MIKGGSPVIY DKNKKSRFGI LPKNAENSEN IIWVESAETF CFHLWNAWEE
401: PETDEVIVIG SCMTPPDSIF NECNENLKSV LSEIRLNLKT GESTRRQLLS PSDQVNLEAG MVNRNKLGRK TQFAYLAIAE PWPKVSGFAK VDLSTGEIKK
501: HIYGDKRYGG EPLFLPRNVN SEKEDDGYIL AFCHDEKTWK SELQIVNAMT LELEATVKLP SRVPYGFHGT FISSKDLQNQ V

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.