Factsheet for GSMUA_Achr7P01250_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P02560_001
GSMUA_Achr7P21740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	GSMUA_Achr7P02560_001	AT5G17790.1	15340011
AT1G30100.1	GSMUA_Achr7P21740_001	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P22870_001	Banana	plastid	82.09	82.36
GSMUA_Achr5P02570_001	Banana	plastid	79.1	78.2
GSMUA_Achr2P12950_001	Banana	plastid	75.62	77.42
GSMUA_Achr4P31460_001	Banana	plastid	75.62	75.62
Zm00001d023690_P001	Maize	cytosol	15.92	73.28
GSMUA_Achr6P31180_001	Banana	plastid	72.8	72.8
Bra001552.1-P	Field mustard	cytosol	47.76	72.73
CDX82482	Canola	cytosol	47.76	72.73
Zm00001d027690_P001	Maize	cytosol	9.29	72.73
CDX98456	Canola	cytosol	30.51	72.16
CDY57471	Canola	cytosol	47.26	71.97
Zm00001d008638_P001	Maize	cytosol	9.78	71.95
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	60.03	71.54
Os12t0617400-01	Rice	cytosol	32.84	69.96
CDY39117	Canola	mitochondrion	63.18	68.9
Bra012603.1-P	Field mustard	cytosol	49.59	67.65
Zm00001d033222_P001	Maize	extracellular	66.33	66.23
Zm00001d018819_P001	Maize	plastid	62.85	66.14
OQU88453	Sorghum	plastid	62.52	65.79
Zm00001d031086_P001	Maize	plastid	61.69	65.38
Zm00001d007876_P001	Maize	plastid	62.19	65.22
PGSC0003DMT400039054	Potato	plastid	62.69	65.17
Solyc08g016720.1.1	Tomato	plastid	62.69	65.06
Zm00001d013689_P001	Maize	plastid	64.51	64.73
TraesCS5A01G374000.1	Wheat	plastid	63.35	64.64
TraesCS5D01G383500.1	Wheat	plastid	63.68	64.54
EER93751	Sorghum	plastid	65.34	64.48
TraesCS5B01G375900.1	Wheat	plastid	63.52	64.37
CDY33218	Canola	plastid	63.68	64.21
VIT_19s0093g00550.t01	Wine grape	plastid	64.84	64.2
VIT_10s0003g03750.t01	Wine grape	plastid	64.34	64.13
Bra021558.1-P	Field mustard	plastid	63.52	64.05
Os03t0645900-00	Rice	plastid	64.51	63.98
CDX98455	Canola	plastid	63.18	63.82
TraesCS2D01G251600.1	Wheat	plastid	61.36	63.57
Os07t0154100-01	Rice	plastid	61.36	63.57
CDX97576	Canola	plastid	62.85	63.48
Bra027336.1-P	Field mustard	plastid	62.85	63.48
Zm00001d041319_P001	Maize	plastid	63.02	62.91
Solyc07g056570.1.1	Tomato	plastid	63.02	62.81
HORVU5Hr1G008050.1	Barley	plastid	63.18	62.77
AT3G14440.1	Thale cress	plastid	62.19	62.6
HORVU5Hr1G054970.1	Barley	cytosol	62.85	62.34
TraesCS2B01G268400.1	Wheat	plastid	61.03	61.74
Bra032359.1-P	Field mustard	plastid	60.2	61.73
CDY26294	Canola	plastid	60.2	61.63
TraesCS5D01G038800.1	Wheat	plastid	62.85	61.63
TraesCS5B01G029300.1	Wheat	plastid	62.69	61.56
AT1G30100.1	Thale cress	plastid	60.03	61.46
CDY61838	Canola	plastid	59.7	61.12
TraesCS2A01G250600.1	Wheat	plastid	60.03	61.05
Zm00001d000095_P001	Maize	cytosol	16.58	60.98
CDX88443	Canola	plastid	60.86	60.96
Bra035033.1-P	Field mustard	plastid	60.7	60.8
CDY52448	Canola	plastid	60.53	60.63
CDY55629	Canola	cytosol, plastid	58.54	60.55
Bra013298.1-P	Field mustard	plastid	58.04	60.24
CDX99475	Canola	plastid	58.04	60.24
CDY01534	Canola	cytosol, plastid	58.21	60.21
AT4G18350.1	Thale cress	cytosol, plastid	58.04	60.03
CDX78842	Canola	plastid	57.71	59.9
Bra008358.1-P	Field mustard	plastid	58.04	59.63
HORVU5Hr1G092850.2	Barley	plastid	63.52	59.47
GSMUA_Achr8P12840_001	Banana	plastid	56.05	58.68
HORVU5Hr1G044510.1	Barley	cytosol	58.37	58.67
Zm00001d000157_P001	Maize	cytosol	9.78	56.19
AT1G78390.1	Thale cress	cytosol, plastid	60.2	55.25
CDX98457	Canola	plastid	28.86	55.24
GSMUA_Achr5P15630_001	Banana	plastid	53.9	54.62
Zm00001d042076_P001	Maize	cytosol, plastid	35.66	51.19
Zm00001d023458_P001	Maize	cytosol	11.11	47.52
Zm00001d022623_P001	Maize	cytosol	29.35	47.45
KRH45171	Soybean	plastid	11.94	43.64
Zm00001d035724_P001	Maize	plastid	42.62	40.47
Zm00001d019813_P001	Maize	plastid	12.27	39.15
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	33.5	36.93
Zm00001d009286_P001	Maize	plastid	13.6	32.54
Zm00001d033377_P001	Maize	plastid	13.76	29.23
GSMUA_Achr4P19020_001	Banana	plastid	25.37	29.09
Zm00001d027592_P001	Maize	mitochondrion	17.25	24.41

Protein Annotations

EnsemblPlants:GSMUA_Achr7P01250_001	EnsemblPlants:GSMUA_Achr7T01250_001	EnsemblPlantsGene:GSMUA_Achr7G01250_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	SEG:seg	UniParc:UPI00029604C3	UniProt:M0TDR5
MapMan:11.1.1.4	:	:	:	:	:

Description

9-cis-epoxycarotenoid dioxygenase 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G01250_001]

Coordinates

chr7:+:963424..965235

Molecular Weight (calculated)

66292.3 Da

IEP (calculated)

5.466

GRAVY (calculated)

-0.245

Length

603 amino acids

Sequence
(BLAST)

001: MASATTAMTS TLQLPPNPVK LTRKQASATT TRVHCSASSN SLLNLATNAT PAYFPIPFHK EATTSVASKS RRPAQSGGDD GAARTSWNLL QWVAAAALDT
101: VEQAFVSNVL ERGHPLPKTA DPAVQIAGNF APVDERPPCH GLLVEGRIPV SIDGVYVRNG ANPQFEPVAG HHFFDGDGMV HAVRLCNGAA AYSCRYTETE
201: RLRQERAIGK PVFPKAIGEL HGHSGVARLL LFYARSLFGL VDGSRGMGVA NAGLVYFNDR LLAMSEDDVP YHVRITPSGD LETVERYDFG GQLGSSMIAH
301: PKLDPVSREL FALSYDVIHR PYLKYFYFSP DGEKSADVEI PLEQPTMTHD FAITENYVVV PDQQVVFKLQ EMVRGGSPVV YDTTKTARFG VLPKYAADAS
401: EMRWVDVPDC FCFHLWNAWE EPATGEVVVI GSCMTPPDSV FNEREENLRS VLSEIRLDLH TGESRRRPIL SPADQVNLEA GTVNRNMMGR KTRHAYLAVA
501: EPWPKVSGFT KIDLFTGETK QFIFGDGRYG GEPYFVPSND SDACSDDDGY VLTFMHDEET LESELLIVNA ANMRLEATVK LPSRVPYGFH GTFITSSDLE
601: SQA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.