Factsheet for Zm00001d000157_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000095_P001	Maize	cytosol	88.57	56.71
KRH45171	Soybean	plastid	43.81	27.88
Zm00001d019813_P001	Maize	plastid	44.76	24.87
Zm00001d009286_P001	Maize	plastid	45.71	19.05
CDX98457	Canola	plastid	55.24	18.41
Zm00001d033377_P001	Maize	plastid	48.57	17.96
Zm00001d031086_P001	Maize	plastid	81.9	15.11
Zm00001d041319_P001	Maize	plastid	80.0	13.91
Zm00001d033222_P001	Maize	extracellular	72.38	12.58
Zm00001d013689_P001	Maize	plastid	71.43	12.48
Zm00001d018819_P001	Maize	plastid	62.86	11.52
Zm00001d007876_P001	Maize	plastid	62.86	11.48
GSMUA_Achr4P22870_001	Banana	plastid	63.81	11.15
GSMUA_Achr5P02570_001	Banana	plastid	63.81	10.98
GSMUA_Achr2P12950_001	Banana	plastid	60.95	10.87
GSMUA_Achr4P31460_001	Banana	plastid	61.9	10.78
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	51.43	10.67
CDY39117	Canola	mitochondrion	54.29	10.31
GSMUA_Achr6P31180_001	Banana	plastid	59.05	10.28
VIT_10s0003g03750.t01	Wine grape	plastid	59.05	10.25
PGSC0003DMT400039054	Potato	plastid	55.24	10.0
Solyc08g016720.1.1	Tomato	plastid	55.24	9.98
GSMUA_Achr7P01250_001	Banana	plastid	56.19	9.78
CDX98455	Canola	plastid	55.24	9.72
CDX97576	Canola	plastid	55.24	9.72
Bra027336.1-P	Field mustard	plastid	55.24	9.72
CDY33218	Canola	plastid	55.24	9.7
Bra021558.1-P	Field mustard	plastid	55.24	9.7
VIT_19s0093g00550.t01	Wine grape	plastid	56.19	9.69
Zm00001d035724_P001	Maize	plastid	58.1	9.61
Bra032359.1-P	Field mustard	plastid	53.33	9.52
AT1G30100.1	Thale cress	plastid	53.33	9.51
CDY61838	Canola	plastid	53.33	9.51
CDY26294	Canola	plastid	53.33	9.51
AT4G18350.1	Thale cress	cytosol, plastid	52.38	9.43
Bra008358.1-P	Field mustard	plastid	52.38	9.37
AT3G14440.1	Thale cress	plastid	53.33	9.35
CDX88443	Canola	plastid	53.33	9.3
Solyc07g056570.1.1	Tomato	plastid	53.33	9.26
CDY52448	Canola	plastid	52.38	9.14
CDY55629	Canola	cytosol, plastid	50.48	9.09
CDY01534	Canola	cytosol, plastid	50.48	9.09
Bra035033.1-P	Field mustard	plastid	51.43	8.97
Bra013298.1-P	Field mustard	plastid	49.52	8.95
CDX99475	Canola	plastid	49.52	8.95
CDX78842	Canola	plastid	48.57	8.78
AT1G78390.1	Thale cress	cytosol, plastid	54.29	8.68
Zm00001d048373_P002	Maize	cytosol, plasma membrane	33.33	6.36
Bra012603.1-P	Field mustard	cytosol	24.76	5.88
Zm00001d051556_P001	Maize	plastid	32.38	5.33
Zm00001d017766_P001	Maize	plastid	32.38	5.32
Zm00001d020069_P002	Maize	plastid	26.67	5.01
Zm00001d045232_P001	Maize	plastid	24.76	4.24
Zm00001d023458_P001	Maize	cytosol	4.76	3.55
CDY57471	Canola	cytosol	12.38	3.28
CDX82482	Canola	cytosol	12.38	3.28
Bra001552.1-P	Field mustard	cytosol	12.38	3.28
Zm00001d027592_P001	Maize	mitochondrion	9.52	2.35
Zm00001d042076_P001	Maize	cytosol, plastid	6.67	1.67
CDX98456	Canola	cytosol	0.0	0.0
Zm00001d034075_P001	Maize	cytosol	0.0	0.0
Zm00001d027690_P001	Maize	cytosol	0.0	0.0
Zm00001d023690_P001	Maize	cytosol	0.0	0.0
Zm00001d022623_P001	Maize	cytosol	0.0	0.0
Zm00001d008638_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d000157_P001	EnsemblPlants:Zm00001d000157_T001	EnsemblPlantsGene:Zm00001d000157	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF49	PFAM:PF03055	UniParc:UPI0002216B17	UniProt:A0A1X7YFJ3	MapMan:35.1

Description

9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic

Coordinates

chrB73V4_ctg75:-:477512..477829

Molecular Weight (calculated)

11659.0 Da

IEP (calculated)

10.506

GRAVY (calculated)

-0.305

Length

105 amino acids

Sequence
(BLAST)

001: MPRVGHDRGL LERPRALVRS ADPAVQIAGN FAPVGEQAPV RSLPVSGRIP PFILGVYARN RANPYFEPST GHHLFDDDGM VRAVRIRYGA VESYACRFTE
101: TARLR

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.