Factsheet for GSMUA_Achr4P22870_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P02560_001
GSMUA_Achr7P21740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	GSMUA_Achr7P02560_001	AT5G17790.1	15340011
AT1G30100.1	GSMUA_Achr7P21740_001	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P02570_001	Banana	plastid	85.03	83.77
GSMUA_Achr7P01250_001	Banana	plastid	82.36	82.09
GSMUA_Achr4P31460_001	Banana	plastid	79.87	79.6
GSMUA_Achr2P12950_001	Banana	plastid	77.54	79.12
GSMUA_Achr6P31180_001	Banana	plastid	75.71	75.46
Bra001552.1-P	Field mustard	cytosol	49.25	74.75
CDX82482	Canola	cytosol	49.25	74.75
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	62.73	74.51
CDX98456	Canola	cytosol	31.45	74.12
CDY57471	Canola	cytosol	48.75	73.99
Zm00001d023690_P001	Maize	cytosol	15.47	70.99
Os12t0617400-01	Rice	cytosol	33.11	70.32
Zm00001d027690_P001	Maize	cytosol	8.99	70.13
CDY39117	Canola	mitochondrion	64.23	69.8
Bra012603.1-P	Field mustard	cytosol	51.25	69.68
Zm00001d008638_P001	Maize	cytosol	9.48	69.51
Zm00001d031086_P001	Maize	plastid	63.73	67.31
VIT_19s0093g00550.t01	Wine grape	plastid	67.89	67.0
PGSC0003DMT400039054	Potato	plastid	64.56	66.9
Solyc08g016720.1.1	Tomato	plastid	64.56	66.78
Zm00001d033222_P001	Maize	extracellular	67.05	66.72
Zm00001d000095_P001	Maize	cytosol	18.14	66.46
Zm00001d018819_P001	Maize	plastid	63.23	66.32
TraesCS5A01G374000.1	Wheat	plastid	65.06	66.16
Solyc07g056570.1.1	Tomato	plastid	66.56	66.12
Zm00001d013689_P001	Maize	plastid	66.06	66.06
TraesCS5D01G383500.1	Wheat	plastid	65.22	65.88
TraesCS5B01G375900.1	Wheat	plastid	65.22	65.88
OQU88453	Sorghum	plastid	62.73	65.79
VIT_10s0003g03750.t01	Wine grape	plastid	66.22	65.79
CDY33218	Canola	plastid	65.39	65.72
EER93751	Sorghum	plastid	66.39	65.3
Bra021558.1-P	Field mustard	plastid	64.89	65.22
Zm00001d007876_P001	Maize	plastid	62.4	65.22
CDX98455	Canola	plastid	64.23	64.66
Bra027336.1-P	Field mustard	plastid	64.06	64.49
Os03t0645900-00	Rice	plastid	65.22	64.47
CDX97576	Canola	plastid	63.73	64.15
Zm00001d041319_P001	Maize	plastid	64.39	64.07
AT1G30100.1	Thale cress	plastid	62.56	63.84
Zm00001d000157_P001	Maize	cytosol	11.15	63.81
Bra032359.1-P	Field mustard	plastid	62.4	63.78
AT3G14440.1	Thale cress	plastid	63.56	63.77
TraesCS2D01G251600.1	Wheat	plastid	61.73	63.75
CDY26294	Canola	plastid	62.4	63.67
HORVU5Hr1G008050.1	Barley	plastid	64.06	63.43
CDY61838	Canola	plastid	62.06	63.33
HORVU5Hr1G054970.1	Barley	cytosol	63.89	63.16
TraesCS5B01G029300.1	Wheat	plastid	64.23	62.87
TraesCS5D01G038800.1	Wheat	plastid	64.23	62.76
Os07t0154100-01	Rice	plastid	60.73	62.71
Bra013298.1-P	Field mustard	plastid	59.9	61.96
TraesCS2B01G268400.1	Wheat	plastid	61.4	61.91
CDY55629	Canola	cytosol, plastid	59.9	61.75
AT4G18350.1	Thale cress	cytosol, plastid	59.73	61.58
CDX78842	Canola	plastid	59.4	61.45
CDY01534	Canola	cytosol, plastid	59.57	61.41
TraesCS2A01G250600.1	Wheat	plastid	60.57	61.38
CDX99475	Canola	plastid	59.23	61.27
CDX88443	Canola	plastid	61.23	61.13
Bra035033.1-P	Field mustard	plastid	60.9	60.8
CDY52448	Canola	plastid	60.73	60.63
HORVU5Hr1G092850.2	Barley	plastid	64.89	60.56
Bra008358.1-P	Field mustard	plastid	58.9	60.31
HORVU5Hr1G044510.1	Barley	cytosol	60.07	60.17
GSMUA_Achr8P12840_001	Banana	plastid	56.91	59.38
GSMUA_Achr5P15630_001	Banana	plastid	55.57	56.13
AT1G78390.1	Thale cress	cytosol, plastid	61.23	56.01
CDX98457	Canola	plastid	28.79	54.92
Zm00001d042076_P001	Maize	cytosol, plastid	36.94	52.86
Zm00001d022623_P001	Maize	cytosol	30.45	49.06
Zm00001d023458_P001	Maize	cytosol	11.48	48.94
KRH45171	Soybean	plastid	12.31	44.85
Zm00001d019813_P001	Maize	plastid	13.31	42.33
Zm00001d035724_P001	Maize	plastid	43.59	41.26
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	33.61	36.93
Zm00001d009286_P001	Maize	plastid	13.81	32.94
Zm00001d033377_P001	Maize	plastid	13.98	29.58
GSMUA_Achr4P19020_001	Banana	plastid	24.96	28.52
Zm00001d027592_P001	Maize	mitochondrion	17.97	25.35

Protein Annotations

EnsemblPlants:GSMUA_Achr4P22870_001	EnsemblPlants:GSMUA_Achr4T22870_001	EnsemblPlantsGene:GSMUA_Achr4G22870_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	SEG:seg	UniParc:UPI000296BE36	UniProt:M0SR99
MapMan:11.1.1.4	:	:	:	:	:

Description

9-cis-epoxycarotenoid dioxygenase 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G22870_001]

Coordinates

chr4:-:23153783..23155588

Molecular Weight (calculated)

66452.2 Da

IEP (calculated)

6.460

GRAVY (calculated)

-0.210

Length

601 amino acids

Sequence
(BLAST)

001: MTTATSAMTS TVRSAANPVK LIRKHAAPAT LRIRCSASNS LLNLTSDASP AYYLAPCHKE VAPTTVAMPA SKPDQSTQSC GARPRWNLVQ RMAAAALDTI
101: EDAFVSNVLE RPRPLPKTAD PAVQIAGNFA PVDEQAPCHD LPVEGRIPSF ISGVYVRNGA NPLFEPVAGH HFFDGDGMVH AVHLRNGAAT YACRYTETER
201: LRQERAIGKP VFPKAIGELH GHSGIARLLL FYARSLFGLV NGSRGMGVAN AGLVYFNDRL LAMSEDDIPY HVRITPSGDL ETVERYDFGG QLRSSMIAHP
301: KLDPFSRELF ALSYDVIQKP YLKYFYFSPD GKKSPDVEIP LEQPTMMHDF AITENYVVVP DQQVVFKLQE MIRGGSPVVY DQAKTARFGV LPKYAADASE
401: MRWVDVPDCF CFHLWNAWEE PATGEVVVIG SCMTPPDSVF NECEERLNSV LSEIRLDLNT GKSTRRSILS PADQLNLEAG MVNRNMLGRK TRYAYLAIAE
501: PWPKVSGFAK VDLFTGEISK FIFGDSRYGG EPYFLPRDSN SLREDDGYVL TFMHDEKTSA SELLIVNAVD MRLEASVKLP SRVPYGFHGT FVGSKDLESQ
601: A

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.