Factsheet for Zm00001d033222_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 22192489

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93751	Sorghum	plastid	95.53	94.44
Zm00001d013689_P001	Maize	plastid	93.21	93.68
Zm00001d008638_P001	Maize	cytosol	12.25	90.24
Zm00001d027690_P001	Maize	cytosol	11.42	89.61
Zm00001d023690_P001	Maize	cytosol	19.21	88.55
TraesCS5A01G374000.1	Wheat	plastid	81.62	83.42
TraesCS5D01G383500.1	Wheat	plastid	82.12	83.36
TraesCS5B01G375900.1	Wheat	plastid	81.62	82.86
Zm00001d031086_P001	Maize	plastid	74.67	79.26
Zm00001d041319_P001	Maize	plastid	77.65	77.65
HORVU5Hr1G092850.2	Barley	plastid	81.95	76.86
HORVU5Hr1G054970.1	Barley	cytosol	76.66	76.15
Zm00001d000095_P001	Maize	cytosol	20.2	74.39
HORVU5Hr1G044510.1	Barley	cytosol	73.84	74.33
Zm00001d000157_P001	Maize	cytosol	12.58	72.38
CDX82482	Canola	cytosol	46.36	70.71
Bra001552.1-P	Field mustard	cytosol	46.36	70.71
CDY57471	Canola	cytosol	45.7	69.7
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	58.11	69.37
Zm00001d018819_P001	Maize	plastid	65.56	69.11
Zm00001d007876_P001	Maize	plastid	65.4	68.7
Bra012603.1-P	Field mustard	cytosol	50.17	68.55
CDX98456	Canola	cytosol	28.81	68.24
GSMUA_Achr4P22870_001	Banana	plastid	66.72	67.05
CDY39117	Canola	mitochondrion	60.93	66.55
GSMUA_Achr2P12950_001	Banana	plastid	64.74	66.38
GSMUA_Achr7P01250_001	Banana	plastid	66.23	66.33
GSMUA_Achr5P02570_001	Banana	plastid	66.72	66.07
GSMUA_Achr4P31460_001	Banana	plastid	64.57	64.68
GSMUA_Achr6P31180_001	Banana	plastid	64.07	64.18
Bra021558.1-P	Field mustard	plastid	62.75	63.38
CDY33218	Canola	plastid	62.58	63.21
Bra027336.1-P	Field mustard	plastid	62.42	63.15
CDX97576	Canola	plastid	61.92	62.65
CDX98455	Canola	plastid	61.76	62.48
VIT_19s0093g00550.t01	Wine grape	plastid	62.75	62.23
AT3G14440.1	Thale cress	plastid	61.59	62.1
PGSC0003DMT400039054	Potato	plastid	59.27	61.72
Bra013298.1-P	Field mustard	plastid	58.94	61.27
Solyc08g016720.1.1	Tomato	plastid	58.94	61.27
AT1G30100.1	Thale cress	plastid	59.6	61.12
Bra032359.1-P	Field mustard	plastid	59.44	61.05
VIT_10s0003g03750.t01	Wine grape	plastid	60.93	60.83
CDX88443	Canola	plastid	60.6	60.8
CDY61838	Canola	plastid	59.27	60.78
CDY26294	Canola	plastid	59.27	60.78
CDX78842	Canola	plastid	58.44	60.76
CDY52448	Canola	plastid	60.43	60.63
CDX99475	Canola	plastid	58.28	60.59
Bra035033.1-P	Field mustard	plastid	60.26	60.47
CDY55629	Canola	cytosol, plastid	58.28	60.38
Solyc07g056570.1.1	Tomato	plastid	60.43	60.33
CDY01534	Canola	cytosol, plastid	58.11	60.21
AT4G18350.1	Thale cress	cytosol, plastid	57.78	59.86
Bra008358.1-P	Field mustard	plastid	57.62	59.28
Zm00001d023458_P001	Maize	cytosol	13.74	58.87
CDX98457	Canola	plastid	29.8	57.14
AT1G78390.1	Thale cress	cytosol, plastid	61.42	56.47
Zm00001d019813_P001	Maize	plastid	17.22	55.03
Zm00001d042076_P001	Maize	cytosol, plastid	35.93	51.67
Zm00001d022623_P001	Maize	cytosol	29.8	48.26
Zm00001d009286_P001	Maize	plastid	18.54	44.44
Zm00001d035724_P001	Maize	plastid	45.36	43.15
Zm00001d033377_P001	Maize	plastid	18.87	40.14
KRH45171	Soybean	plastid	10.93	40.0
Zm00001d034075_P001	Maize	cytosol	2.32	38.89
Zm00001d048373_P002	Maize	cytosol, plasma membrane	32.95	36.18
Zm00001d051556_P001	Maize	plastid	36.09	34.17
Zm00001d017766_P001	Maize	plastid	35.93	33.96
Zm00001d027592_P001	Maize	mitochondrion	20.2	28.64
Zm00001d020069_P002	Maize	plastid	22.68	24.51
Zm00001d045232_P001	Maize	plastid	21.85	21.53

Protein Annotations

MapMan:11.1.1.4	UniProt:A0A1D6KX21	InterPro:Carotenoid_Oase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009688
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0045549	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	ProteinID:ONM07009.1	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	UniParc:UPI00022178CD
EnsemblPlantsGene:Zm00001d033222	EnsemblPlants:Zm00001d033222_P001	EnsemblPlants:Zm00001d033222_T001	SEG:seg	:	:

Description

viviparous14 viviparous14

Coordinates

chr1:-:255021507..255023321

Molecular Weight (calculated)

65465.7 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.183

Length

604 amino acids

Sequence
(BLAST)

001: MQGLAPPTSV SIHRHLPARS RARASNSVRF SPRAVSSVPP AECLQAPFHK PVADLPAPSR KPAAIAVPGH SAAPRKADGG KKQLNLFQRA AAAALDAFEE
101: GFVANVLERP HGLPSTADPA VQIAGNFAPV GESPPVHELP VSGRIPPFID GVYARNGANP CFDPVAGHHL FDGDGMVHAL RIRNGAAESY ACRFTETARL
201: RQERAIGRPV FPKAIGELHG HSGIARLALF YARAACGLVD PSAGTGVANA GLVYFNGRLL AMSEDDLPYH VRVADDGDLE TVGRYDFDGQ LGCAMIAHPK
301: LDPATGELHA LSYDVIKRPY LKYFYFRPDG TKSDDVEIPL EQPTMIHDFA ITENFVVVPD HQVVFKLQEM LRGGSPVVLD KEKTSRFGVL PKHAADASEM
401: AWVDVPDCFC FHLWNAWEDE ATGEVVVIGS CMTPADSIFN ESDERLESVL TEIRLDARTG RSTRRAVLPP SQQVNLEVGM VNRNLLGRET RYAYLAVAEP
501: WPKVSGFAKV DLSTGELTKF EYGEGRFGGE PCFVPMDPAA AHPRGEDDGY VLTFVHDERA GTSELLVVNA ADMRLEATVQ LPSRVPFGFH GTFITGQELE
601: AQAA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.