CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035033.1-P	Field mustard	plastid	99.83	99.83
CDX88443	Canola	plastid	97.01	97.01
AT1G78390.1	Thale cress	cytosol, plastid	86.88	79.6
CDX98456	Canola	cytosol	32.23	76.08
CDX82482	Canola	cytosol	50.0	76.01
CDY57471	Canola	cytosol	49.67	75.51
Zm00001d023690_P001	Maize	cytosol	15.95	73.28
Zm00001d008638_P001	Maize	cytosol	9.97	73.17
Zm00001d027690_P001	Maize	cytosol	9.3	72.73
CDY39117	Canola	mitochondrion	66.11	71.97
CDY33218	Canola	plastid	66.78	67.22
Os12t0617400-01	Rice	cytosol	31.56	67.14
CDX97576	Canola	plastid	66.28	66.83
CDX98455	Canola	plastid	66.28	66.83
CDY26294	Canola	plastid	63.79	65.2
CDY61838	Canola	plastid	63.46	64.86
CDX78842	Canola	plastid	60.3	62.48
CDX99475	Canola	plastid	60.13	62.31
Zm00001d031086_P001	Maize	plastid	58.8	62.21
CDY55629	Canola	cytosol, plastid	60.13	62.09
TraesCS5A01G374000.1	Wheat	plastid	60.63	61.76
CDY01534	Canola	cytosol, plastid	59.8	61.75
TraesCS5B01G375900.1	Wheat	plastid	60.96	61.68
TraesCS5D01G383500.1	Wheat	plastid	60.96	61.68
Zm00001d018819_P001	Maize	plastid	58.64	61.61
OQU88453	Sorghum	plastid	58.14	61.08
GSMUA_Achr4P22870_001	Banana	plastid	60.63	60.73
GSMUA_Achr6P31180_001	Banana	plastid	60.8	60.7
GSMUA_Achr5P02570_001	Banana	plastid	61.46	60.66
GSMUA_Achr7P01250_001	Banana	plastid	60.63	60.53
GSMUA_Achr2P12950_001	Banana	plastid	59.14	60.44
Zm00001d033222_P001	Maize	extracellular	60.63	60.43
Os03t0645900-00	Rice	plastid	60.96	60.36
EER93751	Sorghum	plastid	61.13	60.23
Zm00001d007876_P001	Maize	plastid	57.48	60.17
Os07t0154100-01	Rice	plastid	58.14	60.14
TraesCS2D01G251600.1	Wheat	plastid	57.97	59.97
HORVU5Hr1G008050.1	Barley	plastid	59.63	59.14
Zm00001d013689_P001	Maize	plastid	58.97	59.07
HORVU5Hr1G054970.1	Barley	cytosol	59.63	59.05
Zm00001d041319_P001	Maize	plastid	58.97	58.77
TraesCS5B01G029300.1	Wheat	plastid	59.8	58.63
TraesCS2B01G268400.1	Wheat	plastid	57.97	58.56
GSMUA_Achr4P31460_001	Banana	plastid	58.47	58.37
TraesCS5D01G038800.1	Wheat	plastid	59.63	58.37
CDX98457	Canola	plastid	30.4	58.1
TraesCS2A01G250600.1	Wheat	plastid	56.64	57.5
HORVU5Hr1G092850.2	Barley	plastid	60.96	56.99
HORVU5Hr1G044510.1	Barley	cytosol	56.48	56.67
Zm00001d000095_P001	Maize	cytosol	15.28	56.1
CDX77467	Canola	plastid	52.49	54.02
CDX85148	Canola	cytosol	51.99	53.5
Zm00001d000157_P001	Maize	cytosol	9.14	52.38
Zm00001d023458_P001	Maize	cytosol	11.63	49.65
Zm00001d042076_P001	Maize	cytosol, plastid	32.39	46.43
Zm00001d022623_P001	Maize	cytosol	26.08	42.09
CDY53711	Canola	cytosol	33.55	38.48
CDX93902	Canola	cytosol	33.39	38.29
Zm00001d035724_P001	Maize	plastid	39.87	37.8
CDX76489	Canola	plastid	31.06	35.15
CDY34748	Canola	endoplasmic reticulum, extracellular	27.91	34.78
CDY34746	Canola	cytosol	7.31	34.38
CDX99397	Canola	plastid	32.89	33.39
CDX78923	Canola	plastid	32.89	33.22
Zm00001d019813_P001	Maize	plastid	10.3	32.8
CDY34747	Canola	cytosol	7.14	31.85
CDX76782	Canola	mitochondrion	31.56	31.05
CDX76783	Canola	plastid	30.73	30.28
Zm00001d009286_P001	Maize	plastid	11.13	26.59
Zm00001d027592_P001	Maize	mitochondrion	18.27	25.82
Zm00001d033377_P001	Maize	plastid	11.46	24.3

Protein Annotations

EnsemblPlants:CDY52448	EnsemblPlantsGene:GSBRNA2T00006993001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF42	PFAM:PF03055	ProteinID:CDY52448	ProteinID:CDY52448.1	SEG:seg	UniParc:UPI0004EF1CEF
UniProt:A0A078ITS9	MapMan:11.1.1.4	:	:	:	:

Description

BnaA07g39250DBnaA07g39250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITS9]

Coordinates

chrLK033087:+:74986..76794

Molecular Weight (calculated)

66758.3 Da

IEP (calculated)

6.296

GRAVY (calculated)

-0.299

Length

602 amino acids

Sequence
(BLAST)

001: MASTSTTLLP STPTQFLDRS LRHNLQSLSF SSSPTLGNKK LNPCSVSSSN NKTFSISSSL QSPATYQPPS WKKLCNDVAS LITKTTSHNP IQRTAATILD
101: AVENAMVSHE RRRHPLPKTA DPAVQIAGNF FPVPEQPVKH NLPVTGTVPE CIQGVYVRNG ANPLHKPISG HHLFDGDGMI HAVRFNNGSV SYSCRFTETN
201: RFVQERELGR SVFPKAIGEL HGHLGIAKLM LFNARGLFGL LDPTQGLGVA NAGLVYFNGH LLAMSEDDLP YHVKVTQTGD LETSGRYDFD GQLKSTMIAH
301: PKLDPETREL FALSYDVVSK PYLKYFRFSS DGQKSPDVEI PLDQPTMIHD FAITENFVVV PDQQVVFRLP EMIRGGSPVV YDKNKKSRFG VLDKYAEDAS
401: SMRWIEVEDC FCFHLWNAWE EAETDEVVVI GSCMTPPDSI FNEHDETLQS VLSEIRLNLR TGESTRRPVI SEELNLEAGM VNRNLLGRKT RFAYLALTEP
501: WPKVSGFAKV DLSTGEVQKY IYGDGKYGGE PLFMPEGSSY AGEGGGYVMV FVHDEENVRS ELQIINAGSL KLEATVTLPS RVPYGFHGTF ISNEDLLKQA
601: LC

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.