CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000095_P001	Maize	cytosol	29.21	56.1
Zm00001d000157_P001	Maize	cytosol	18.41	55.24
Zm00001d027690_P001	Maize	cytosol	13.02	53.25
CDX97576	Canola	plastid	99.37	52.43
CDX98455	Canola	plastid	98.1	51.76
CDY33218	Canola	plastid	92.7	48.83
Zm00001d008638_P001	Maize	cytosol	12.7	48.78
AT3G14440.1	Thale cress	plastid	89.52	47.08
CDY39117	Canola	mitochondrion	80.0	45.57
CDX82482	Canola	cytosol	42.86	34.09
CDY57471	Canola	cytosol	42.54	33.84
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	54.29	33.79
VIT_19s0093g00550.t01	Wine grape	plastid	65.08	33.66
Solyc07g056570.1.1	Tomato	plastid	62.22	32.4
Zm00001d019813_P001	Maize	plastid	19.37	32.28
KRH43866	Soybean	plastid	45.08	30.94
CDX88443	Canola	plastid	59.05	30.9
Zm00001d023690_P001	Maize	cytosol	12.7	30.53
CDY52448	Canola	plastid	58.1	30.4
CDY26294	Canola	plastid	56.83	30.39
CDY61838	Canola	plastid	56.83	30.39
CDX99475	Canola	plastid	55.56	30.12
CDX78842	Canola	plastid	55.24	29.95
GSMUA_Achr6P31180_001	Banana	plastid	57.14	29.85
Zm00001d033222_P001	Maize	extracellular	57.14	29.8
CDY01534	Canola	cytosol, plastid	54.92	29.67
CDY55629	Canola	cytosol, plastid	54.92	29.67
Zm00001d013689_P001	Maize	plastid	56.51	29.62
Zm00001d031086_P001	Maize	plastid	53.33	29.53
Os03t0645900-00	Rice	plastid	56.83	29.44
EER93751	Sorghum	plastid	56.83	29.3
HORVU5Hr1G008050.1	Barley	plastid	56.19	29.16
TraesCS5B01G029300.1	Wheat	plastid	56.83	29.15
GSMUA_Achr2P12950_001	Banana	plastid	54.29	29.03
TraesCS5A01G374000.1	Wheat	plastid	54.29	28.93
TraesCS5D01G383500.1	Wheat	plastid	54.6	28.91
TraesCS5B01G375900.1	Wheat	plastid	54.6	28.91
CDY34747	Canola	cytosol	12.38	28.89
GSMUA_Achr7P01250_001	Banana	plastid	55.24	28.86
GSMUA_Achr4P31460_001	Banana	plastid	55.24	28.86
GSMUA_Achr4P22870_001	Banana	plastid	54.92	28.79
TraesCS5D01G038800.1	Wheat	plastid	56.19	28.78
OQU88453	Sorghum	plastid	52.06	28.62
GSMUA_Achr5P02570_001	Banana	plastid	55.24	28.52
Zm00001d018819_P001	Maize	plastid	51.75	28.45
Zm00001d007876_P001	Maize	plastid	51.43	28.17
Zm00001d041319_P001	Maize	plastid	53.97	28.15
TraesCS2D01G251600.1	Wheat	plastid	51.75	28.01
HORVU5Hr1G044510.1	Barley	cytosol	53.02	27.83
Os07t0154100-01	Rice	plastid	51.11	27.66
TraesCS2B01G268400.1	Wheat	plastid	52.06	27.52
TraesCS2A01G250600.1	Wheat	plastid	51.75	27.49
HORVU5Hr1G092850.2	Barley	plastid	55.56	27.17
Zm00001d009286_P001	Maize	plastid	21.59	26.98
HORVU5Hr1G054970.1	Barley	cytosol	51.11	26.48
CDX77467	Canola	plastid	47.94	25.81
CDX85148	Canola	cytosol	47.94	25.81
Zm00001d033377_P001	Maize	plastid	22.22	24.65
Zm00001d035724_P001	Maize	plastid	45.4	22.52
CDX76489	Canola	plastid	30.16	17.86
CDX99397	Canola	plastid	32.7	17.37
CDX78923	Canola	plastid	32.7	17.28
CDY53711	Canola	cytosol	27.94	16.76
CDX93902	Canola	cytosol	26.98	16.19
CDX76782	Canola	mitochondrion	25.4	13.07
CDY34748	Canola	endoplasmic reticulum, extracellular	19.68	12.84
CDX76783	Canola	plastid	24.76	12.77
KRH13600	Soybean	plastid	20.95	11.48
Zm00001d027592_P001	Maize	mitochondrion	12.06	8.92
Zm00001d042076_P001	Maize	cytosol, plastid	6.35	4.76
Zm00001d023458_P001	Maize	cytosol	1.9	4.26
Os12t0617400-01	Rice	cytosol	0.0	0.0
Zm00001d022623_P001	Maize	cytosol	0.0	0.0
CDY34746	Canola	cytosol	0.0	0.0
CDX98456	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX98457	EnsemblPlantsGene:GSBRNA2T00106073001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055
ProteinID:CDX98457	ProteinID:CDX98457.1	SEG:seg	UniParc:UPI0004EEF33C	MapMan:50.1.12	:

Description

BnaC05g39180D

Coordinates

chrLK031905:-:226635..227582

Molecular Weight (calculated)

34070.4 Da

IEP (calculated)

9.034

GRAVY (calculated)

-0.291

Length

315 amino acids

Sequence
(BLAST)

001: MASFTATTAV SRRWVGGNHT KPPLSSSQSS ALNNSCSVPM TNRSQRKLNV SSALHTHPAL HFPKQSSTSP AIVVNPKTKE SDTKQMNLFQ RAAAAALDAA
101: EGFLVSHERQ HPLPKPADPS VQIAGNFAPV NEQPLRRNLP VVGKIPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV TFEDGSASYA CRFTLTNRFI
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGLVDP AHGTGVANAG LVYFNNRLLA MSEDDLPYQV RITPGGDLKT VGRYDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVV

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.